Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB/nlmE   Type   Regulator
Locus tag   IGS65_RS06445 Genome accession   NZ_CP066294
Coordinates   1314752..1315654 (-) Length   300 a.a.
NCBI ID   WP_002263524.1    Uniprot ID   A0AAX1K0S8
Organism   Streptococcus mutans strain 27-3     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1309752..1320654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGS65_RS06435 (IGS65_006435) ulaG 1311045..1312136 (-) 1092 WP_002263526.1 L-ascorbate 6-phosphate lactonase -
  IGS65_RS06440 (IGS65_006440) - 1312715..1314379 (-) 1665 WP_024783275.1 transcription antiterminator -
  IGS65_RS06445 (IGS65_006445) comB/nlmE 1314752..1315654 (-) 903 WP_002263524.1 HlyD family efflux transporter periplasmic adaptor subunit Regulator
  IGS65_RS06450 (IGS65_006450) comA/nlmT 1315668..1317950 (-) 2283 WP_002266017.1 peptide cleavage/export ABC transporter Regulator
  IGS65_RS06455 (IGS65_006455) - 1318605..1319012 (-) 408 WP_002270936.1 hypothetical protein -
  IGS65_RS06460 (IGS65_006460) - 1319031..1319249 (-) 219 WP_002309575.1 Blp family class II bacteriocin -
  IGS65_RS06465 (IGS65_006465) - 1319763..1319939 (-) 177 WP_014834812.1 hypothetical protein -
  IGS65_RS06470 (IGS65_006470) - 1319936..1320211 (-) 276 WP_192072050.1 hypothetical protein -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34116.49 Da        Isoelectric Point: 10.4213

>NTDB_id=519136 IGS65_RS06445 WP_002263524.1 1314752..1315654(-) (comB/nlmE) [Streptococcus mutans strain 27-3]
MDPKFLQSAEFYRRRYHNFATLLIVPLVCLIIFLVIFLCFAKKEITVISTGEVAPTKVVDVIQSYSDSSIIKNNLDNNAA
VEKGDVLIEYSENASPNRQTEQKNIIKERQKREEKEKKKHQKSKKKKKSKSKKASKDKKKKSKDKESSSDDENETKKVSI
FASEDGIIHTNPKYDGANIIPKQTEIAQIYPDIQKTRKVLITYYASSDDVVSMKKGQTARLSLEKKGNDKVVIEGKINNV
ASSATTTKKGNLFKVTAKVKVSKKNSKLIKYGMTGKTVTVIDKKTYFDYFKDKLLHKMDN

Nucleotide


Download         Length: 903 bp        

>NTDB_id=519136 IGS65_RS06445 WP_002263524.1 1314752..1315654(-) (comB/nlmE) [Streptococcus mutans strain 27-3]
ATGGATCCTAAATTTTTACAAAGTGCAGAATTTTATAGGAGACGCTATCATAATTTTGCGACACTATTAATTGTTCCTTT
GGTCTGCTTGATTATCTTCTTGGTCATATTCCTTTGTTTTGCTAAAAAAGAAATTACAGTGATTTCTACTGGTGAAGTTG
CACCAACAAAGGTTGTAGATGTTATCCAATCTTACAGTGACAGTTCAATCATTAAAAATAATTTAGATAATAATGCAGCT
GTTGAGAAGGGAGACGTTTTAATTGAATATTCAGAAAATGCCAGTCCAAACCGTCAGACTGAACAAAAGAATATTATAAA
AGAAAGACAAAAACGAGAAGAGAAGGAAAAGAAAAAACACCAAAAGAGCAAGAAAAAGAAGAAGTCTAAGAGCAAGAAAG
CTTCCAAAGATAAGAAAAAGAAATCGAAAGACAAGGAAAGCAGCTCTGACGATGAAAATGAGACAAAAAAGGTTTCGATT
TTTGCTTCAGAAGATGGTATTATTCATACCAATCCCAAATATGATGGTGCCAATATTATTCCGAAGCAAACCGAGATTGC
TCAAATCTATCCTGATATTCAAAAAACAAGAAAAGTGTTAATCACCTATTATGCTTCTTCTGATGATGTTGTTTCTATGA
AAAAGGGGCAAACCGCTCGTCTTTCCTTGGAAAAAAAGGGAAATGACAAGGTTGTTATTGAAGGAAAAATTAACAATGTC
GCTTCATCAGCAACTACTACTAAAAAAGGAAATCTCTTTAAGGTTACTGCCAAAGTAAAGGTTTCTAAGAAAAATAGCAA
ACTCATCAAGTATGGTATGACAGGCAAGACAGTCACTGTCATTGATAAAAAGACTTATTTTGATTATTTCAAAGATAAAT
TACTGCATAAAATGGATAATTAG

Domains

Predicted by InterproScan.

HlyD family secretion protein (HlyD_3)

(160-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB/nlmE Streptococcus mutans UA159

100

100

1