Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   IGS65_RS05330 Genome accession   NZ_CP066294
Coordinates   1093416..1094456 (-) Length   346 a.a.
NCBI ID   WP_002264420.1    Uniprot ID   -
Organism   Streptococcus mutans strain 27-3     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1088416..1099456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGS65_RS05310 (IGS65_005310) - 1089849..1090385 (-) 537 WP_002270146.1 VanZ family protein -
  IGS65_RS05315 (IGS65_005315) rlmN 1090385..1091470 (-) 1086 WP_002264424.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  IGS65_RS05320 (IGS65_005320) - 1091467..1092015 (-) 549 WP_002268848.1 YutD-like domain-containing protein -
  IGS65_RS05325 (IGS65_005325) - 1092012..1093343 (-) 1332 WP_002262040.1 metallophosphoesterase -
  IGS65_RS05330 (IGS65_005330) sepM 1093416..1094456 (-) 1041 WP_002264420.1 S16 family serine protease SepM Regulator
  IGS65_RS05335 (IGS65_005335) coaD 1094434..1094934 (-) 501 WP_002264419.1 pantetheine-phosphate adenylyltransferase -
  IGS65_RS05340 (IGS65_005340) rsmD 1094924..1095463 (-) 540 WP_002262037.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  IGS65_RS05345 (IGS65_005345) - 1096036..1097811 (-) 1776 WP_192072094.1 oleate hydratase -
  IGS65_RS05350 (IGS65_005350) - 1097932..1098498 (-) 567 WP_002269517.1 TetR/AcrR family transcriptional regulator -
  IGS65_RS05355 (IGS65_005355) - 1098693..1098938 (-) 246 WP_002268902.1 hypothetical protein -
  IGS65_RS05360 (IGS65_005360) - 1098979..1099182 (-) 204 WP_002270141.1 hypothetical protein -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37952.90 Da        Isoelectric Point: 10.1655

>NTDB_id=519127 IGS65_RS05330 WP_002264420.1 1093416..1094456(-) (sepM) [Streptococcus mutans strain 27-3]
MKTNKKFKWWLISGISLILLLMVFFFPLPYYLEMPGGAYDIRSVVTVNHKEDKEKGSYNFVAVSLSKATPIQVLYAWLTP
FTEITSAKETTGGVSDADYMRINQFYMETSQNGAIYKALSLAHKKASFNYMGVYVLQVSKNSTFKGVLNIADTVTGVNDK
TFHSSKELIKYVSGLKLGSKVSVQYTSENKKKTAKGKVIKLSNGKNGIGIGLVDHTKVTSDDKIEFSTNGIGGPSAGLMF
TLDIYDQLVKEDLRKGRIIAGTGTIGEDGSVGDIGGADMKVAAADRINADIFFVPNNPVSKATLKKNPKALTNYQEAKQA
AKKLGTKMKIVPVKNVQEAIDYLRKH

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=519127 IGS65_RS05330 WP_002264420.1 1093416..1094456(-) (sepM) [Streptococcus mutans strain 27-3]
GTGAAAACAAACAAAAAATTTAAATGGTGGCTAATCAGCGGTATCAGTCTTATTTTGCTTTTAATGGTATTCTTTTTTCC
TCTTCCTTACTATTTAGAAATGCCCGGCGGAGCCTATGATATTCGTTCTGTTGTGACGGTTAATCATAAAGAAGATAAAG
AGAAAGGATCTTATAATTTTGTAGCTGTCTCTCTTAGTAAGGCAACCCCCATACAAGTCCTCTATGCTTGGTTGACCCCT
TTTACAGAAATTACCAGTGCCAAGGAAACAACTGGTGGTGTTAGTGATGCGGATTATATGAGGATTAATCAGTTTTATAT
GGAAACCTCACAAAATGGAGCTATCTATAAAGCTCTTTCTTTAGCTCATAAAAAGGCAAGCTTTAATTATATGGGTGTTT
ATGTTTTGCAGGTTAGTAAGAATTCAACATTCAAGGGTGTTTTAAATATTGCTGATACTGTAACAGGCGTTAATGACAAG
ACCTTTCATAGTTCAAAAGAATTGATTAAATATGTGTCTGGACTGAAATTAGGCAGCAAGGTCAGTGTTCAATATACTTC
TGAAAATAAGAAGAAAACAGCCAAGGGCAAAGTTATTAAATTGTCAAATGGCAAAAATGGTATTGGCATTGGCTTGGTTG
ATCATACCAAGGTCACTTCTGATGATAAAATCGAATTTAGCACAAATGGTATTGGAGGGCCAAGTGCCGGTCTCATGTTT
ACCCTTGATATTTACGATCAACTAGTGAAAGAGGACTTACGTAAGGGTCGTATTATTGCAGGTACTGGTACTATTGGAGA
AGACGGGTCTGTTGGGGATATTGGCGGTGCTGATATGAAAGTGGCAGCAGCAGATAGGATTAATGCAGATATCTTTTTTG
TTCCCAATAATCCTGTAAGTAAGGCAACTTTGAAAAAAAATCCCAAAGCTCTCACTAATTATCAAGAAGCTAAGCAGGCT
GCTAAAAAATTAGGCACTAAGATGAAGATTGTCCCTGTTAAAAATGTGCAGGAGGCTATTGATTACCTAAGAAAACACTA
A

Domains

Predicted by InterproScan.

PDZ domain (PDZ_2)

(131-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

99.711

100

0.997