Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   IGS65_RS03580 Genome accession   NZ_CP066294
Coordinates   714682..716436 (-) Length   584 a.a.
NCBI ID   WP_002263294.1    Uniprot ID   A0AAX1K4F0
Organism   Streptococcus mutans strain 27-3     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 714682..749678 714682..716436 within 0


Gene organization within MGE regions


Location: 714682..749678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGS65_RS03580 (IGS65_003580) rcrQ 714682..716436 (-) 1755 WP_002263294.1 ABC transporter ATP-binding protein Regulator
  IGS65_RS03585 (IGS65_003585) rcrP 716426..718228 (-) 1803 WP_002266459.1 ABC transporter ATP-binding protein Regulator
  IGS65_RS03590 (IGS65_003590) rcrR 718232..718666 (-) 435 WP_002263292.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  IGS65_RS03595 (IGS65_003595) queC 719108..719761 (+) 654 WP_192072195.1 7-cyano-7-deazaguanine synthase QueC -
  IGS65_RS03600 (IGS65_003600) queD 719761..720207 (+) 447 WP_002265145.1 6-carboxytetrahydropterin synthase QueD -
  IGS65_RS03605 (IGS65_003605) queE 720204..720920 (+) 717 WP_002263289.1 7-carboxy-7-deazaguanine synthase QueE -
  IGS65_RS03610 (IGS65_003610) queF 720933..721421 (+) 489 WP_002263288.1 preQ(1) synthase -
  IGS65_RS03615 (IGS65_003615) - 721531..721914 (+) 384 WP_002270896.1 DUF3021 family protein -
  IGS65_RS03620 (IGS65_003620) gdhA 722024..723373 (-) 1350 WP_002288953.1 NADP-specific glutamate dehydrogenase -
  IGS65_RS03625 (IGS65_003625) - 724022..724528 (+) 507 WP_002266553.1 DUF308 domain-containing protein -
  IGS65_RS03630 (IGS65_003630) gtfD 724751..729139 (-) 4389 WP_002267852.1 glucosyltransferase-S -
  IGS65_RS03635 (IGS65_003635) - 729359..730279 (-) 921 WP_002266551.1 AEC family transporter -
  IGS65_RS03640 (IGS65_003640) - 730395..732167 (-) 1773 WP_002265074.1 ABC transporter ATP-binding protein -
  IGS65_RS03645 (IGS65_003645) - 732178..733914 (-) 1737 WP_192072194.1 ABC transporter ATP-binding protein -
  IGS65_RS03650 (IGS65_003650) - 734370..736238 (-) 1869 WP_192072193.1 ABC-F family ATP-binding cassette domain-containing protein -
  IGS65_RS03655 (IGS65_003655) - 736241..737446 (-) 1206 WP_002294333.1 CCA tRNA nucleotidyltransferase -
  IGS65_RS03660 (IGS65_003660) dapB 737443..738210 (-) 768 WP_002304913.1 4-hydroxy-tetrahydrodipicolinate reductase -
  IGS65_RS03665 (IGS65_003665) - 738222..739067 (-) 846 WP_002266545.1 DegV family protein -
  IGS65_RS03670 (IGS65_003670) - 739073..739447 (-) 375 WP_002262891.1 DUF1149 family protein -
  IGS65_RS03675 (IGS65_003675) - 739556..741097 (-) 1542 WP_192072192.1 hypothetical protein -
  IGS65_RS03680 (IGS65_003680) - 741084..741800 (-) 717 WP_192072191.1 ABC transporter ATP-binding protein -
  IGS65_RS03685 (IGS65_003685) - 741875..742480 (-) 606 WP_192072190.1 TetR/AcrR family transcriptional regulator -
  IGS65_RS03690 (IGS65_003690) - 742644..743147 (-) 504 WP_032506446.1 phosphatase PAP2 family protein -
  IGS65_RS03695 (IGS65_003695) - 743390..744469 (-) 1080 WP_002271491.1 serine hydrolase -
  IGS65_RS03700 (IGS65_003700) galE 744735..745736 (-) 1002 WP_024782194.1 UDP-glucose 4-epimerase GalE -
  IGS65_RS03705 (IGS65_003705) galT 745885..747360 (-) 1476 WP_192072189.1 UDP-glucose--hexose-1-phosphate uridylyltransferase -
  IGS65_RS03710 (IGS65_003710) - 747365..748537 (-) 1173 WP_192072188.1 galactokinase -
  IGS65_RS03715 (IGS65_003715) - 748680..749678 (+) 999 WP_032507199.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 584 a.a.        Molecular weight: 64590.66 Da        Isoelectric Point: 6.0636

>NTDB_id=519118 IGS65_RS03580 WP_002263294.1 714682..716436(-) (rcrQ) [Streptococcus mutans strain 27-3]
MENKKKSLLSQMAPYLKGYKALFGLAVIFTIVSSTITVIGPDRLKEMTDTMTKGLAGKIDLDKIGEIALTLALLYFAGAL
VSYTASFIVSTLIQKFSQRLRNAIADKINKVPLKYFDSHSQGDTLSRVTNDVDLMTQSFNQSLVSMVAAIILLIGSIFMM
IKTNGALAATAILSVFAGFVLSTVIMAKSQPLFKKQQANLADVSGYVEEVYSGHNVVSSYNAIQQSKKQFENLNDQLFAS
MWKSQFFSGIMMPLMQFIGNFGYVMVCIVGATMAINGDITMGTIVAFMTYVRIFTQPIAQIAQGITQLQSANAAMGRVFE
FLDEEEIEDENHKVKQLEKVEGNVNFDNVFFGYSPDKTIIHDFSAHAKAGQKIAIVGPTGAGKTTIVNLLMRFYEVDRGM
ISIDGVNIHDMTRKEVHDAFAMVLQDTWLFEGTVKENLIYNQKHITDEQVIAAAKAVGVHHFIKTLPKGYDTVLDDSVTL
SVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQRAMDHLMEGRTSFVIAHRLSTIRNADLILVMRDGNIIEQGS
HDQLMAENGFYADLYNSQFTEEVA

Nucleotide


Download         Length: 1755 bp        

>NTDB_id=519118 IGS65_RS03580 WP_002263294.1 714682..716436(-) (rcrQ) [Streptococcus mutans strain 27-3]
ATGGAAAATAAGAAGAAATCATTATTAAGCCAAATGGCTCCTTACCTTAAAGGCTATAAGGCTTTATTTGGACTTGCTGT
CATTTTTACTATCGTTTCAAGTACGATTACTGTTATTGGACCTGACCGGCTGAAAGAGATGACAGATACCATGACCAAAG
GGCTGGCAGGAAAAATTGATTTAGATAAAATCGGTGAGATTGCTCTAACCTTGGCTCTCTTATACTTTGCTGGTGCTTTG
GTTTCTTATACTGCTAGCTTTATTGTGTCCACTTTGATTCAAAAGTTTTCGCAACGTCTGCGCAATGCCATTGCAGATAA
AATCAATAAGGTACCGCTCAAATATTTTGACAGCCATTCACAAGGAGATACCTTGTCTCGAGTGACCAATGATGTGGATT
TAATGACACAGTCTTTCAACCAAAGTTTAGTTTCAATGGTAGCAGCTATAATTCTCCTGATTGGCTCTATTTTCATGATG
ATTAAAACCAATGGAGCTCTTGCAGCGACCGCTATTTTGTCTGTTTTTGCTGGTTTTGTGTTATCCACTGTTATCATGGC
CAAGAGCCAGCCGCTTTTTAAAAAGCAACAAGCTAATCTAGCCGATGTCAGCGGTTATGTTGAAGAGGTCTATTCAGGTC
ATAATGTGGTTTCTAGTTACAATGCGATTCAGCAAAGCAAGAAGCAGTTTGAAAACTTGAATGACCAATTATTTGCAAGT
ATGTGGAAATCACAATTCTTTTCTGGAATTATGATGCCCCTTATGCAATTCATCGGAAATTTTGGGTATGTCATGGTCTG
TATTGTCGGTGCTACCATGGCTATTAACGGCGATATTACTATGGGAACGATTGTTGCCTTTATGACTTACGTCCGTATTT
TTACTCAGCCCATTGCGCAGATTGCTCAAGGAATCACTCAATTGCAATCAGCTAATGCTGCTATGGGACGTGTCTTTGAA
TTTCTTGATGAGGAAGAAATAGAAGACGAAAACCATAAAGTTAAACAACTTGAAAAAGTTGAAGGAAATGTTAATTTTGA
CAATGTTTTCTTTGGTTATAGTCCTGATAAAACTATTATTCATGATTTCTCGGCTCATGCTAAGGCTGGTCAAAAAATTG
CTATTGTGGGACCGACTGGTGCGGGTAAGACAACGATTGTTAACTTACTTATGCGTTTCTATGAGGTTGATAGAGGGATG
ATTTCTATTGATGGAGTTAATATCCATGATATGACACGAAAAGAAGTGCATGATGCTTTTGCCATGGTACTCCAAGATAC
TTGGCTCTTTGAAGGTACAGTTAAGGAAAATCTGATTTATAATCAAAAACATATCACTGATGAGCAAGTGATTGCAGCAG
CTAAGGCAGTTGGTGTTCATCATTTCATCAAGACTTTACCTAAGGGTTATGATACTGTTTTAGATGATTCGGTCACCTTA
TCAGTCGGTCAAAAACAACTCTTGACCATTGCACGTGCTCTTCTTAAAGATGCACCGCTTCTGATTCTTGATGAAGCAAC
TTCCTCTGTTGATACTCGTACGGAAGAACTTATTCAAAGGGCTATGGATCATTTGATGGAGGGGCGGACATCATTCGTTA
TTGCCCATCGTCTGTCAACTATTCGCAATGCTGATCTTATTCTTGTCATGAGAGATGGTAATATTATTGAACAAGGCAGC
CATGACCAATTGATGGCAGAAAATGGCTTCTATGCCGATCTCTATAATAGTCAATTTACAGAAGAAGTGGCTTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(361-508)

ABC transporter transmembrane region (ABC_membrane)

(24-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

100

100

1