Detailed information    

insolico Bioinformatically predicted

Overview

Name   irvR   Type   Regulator
Locus tag   IGS65_RS01605 Genome accession   NZ_CP066294
Coordinates   314518..315411 (-) Length   297 a.a.
NCBI ID   WP_002272311.1    Uniprot ID   -
Organism   Streptococcus mutans strain 27-3     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 309518..320411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGS65_RS01590 (IGS65_001590) - 310570..312060 (-) 1491 WP_002274019.1 FAD-dependent oxidoreductase -
  IGS65_RS01595 (IGS65_001595) - 312184..313062 (+) 879 WP_002264921.1 helix-turn-helix transcriptional regulator -
  IGS65_RS01600 (IGS65_001600) - 313170..314057 (+) 888 WP_192072306.1 NAD(P)H-dependent oxidoreductase -
  IGS65_RS01605 (IGS65_001605) irvR 314518..315411 (-) 894 WP_002272311.1 LexA family transcriptional regulator IrvR Regulator
  IGS65_RS01610 (IGS65_001610) - 315732..316016 (+) 285 WP_002262720.1 helix-turn-helix transcriptional regulator -
  IGS65_RS01615 (IGS65_001615) - 316179..317930 (+) 1752 WP_002264334.1 GbpC/Spa domain-containing protein -
  IGS65_RS09650 - 318060..318290 (+) 231 WP_002282891.1 hypothetical protein -
  IGS65_RS09755 - 318325..318453 (+) 129 WP_002262718.1 hypothetical protein -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 33625.32 Da        Isoelectric Point: 6.7036

>NTDB_id=519110 IGS65_RS01605 WP_002272311.1 314518..315411(-) (irvR) [Streptococcus mutans strain 27-3]
MGRGKLTPQDLEAMKAISANLQRLLAESGMKQSHLATILNIPTSSLNEYVKGKSLPKIGNIQKIADYFGLQKSDIDPRFA
SKKDSSTLDKINHIAKQLEMKRQIKVLDFCYQQSKEQDETASLSASDETTDDKVADKSNHTQYQKVVDSFIAKELNDQTI
IHWDNVIKAKDLYQTFGRQYENIQIYGEVSAGTGIWVGHEKQETIKYPIPIPEHDIALTVNGNSMEPLFYNGDVIFVKKT
KAIHHGQIIVVIVNNEAYVKKLYRKNKEIRLISLNPDYDDIILKEDDTIEVIGTVIT

Nucleotide


Download         Length: 894 bp        

>NTDB_id=519110 IGS65_RS01605 WP_002272311.1 314518..315411(-) (irvR) [Streptococcus mutans strain 27-3]
ATGGGACGCGGTAAATTAACTCCACAAGATTTAGAAGCAATGAAGGCCATTTCTGCCAATCTTCAAAGACTTCTAGCTGA
GAGCGGAATGAAACAATCTCACTTAGCCACTATCCTTAACATTCCTACAAGTAGTCTTAATGAATATGTTAAAGGAAAGA
GTTTGCCAAAAATAGGGAATATTCAAAAAATCGCAGATTACTTTGGTCTCCAAAAATCCGATATTGACCCTAGATTTGCA
AGTAAAAAGGACTCTTCTACTCTTGATAAAATTAATCATATTGCCAAACAATTAGAAATGAAGAGACAGATAAAAGTCTT
AGATTTCTGTTACCAACAATCAAAAGAACAAGATGAAACAGCAAGCTTATCTGCCAGTGATGAAACGACTGATGATAAAG
TTGCTGACAAATCAAATCATACGCAGTATCAAAAGGTTGTTGATTCTTTTATTGCCAAAGAATTAAACGATCAGACAATT
ATTCATTGGGATAATGTGATAAAAGCTAAGGATTTGTATCAAACCTTTGGACGTCAATACGAAAACATTCAGATTTATGG
TGAAGTTTCAGCTGGTACTGGTATCTGGGTTGGACATGAAAAACAAGAAACCATTAAATACCCAATACCAATTCCAGAAC
ATGATATTGCTCTTACTGTCAATGGTAATAGTATGGAACCTTTATTTTACAACGGTGACGTTATTTTTGTTAAAAAGACT
AAAGCTATCCATCACGGACAAATTATCGTTGTTATTGTAAATAATGAGGCATATGTCAAAAAACTCTACCGAAAAAACAA
AGAAATTCGACTTATCTCATTAAATCCAGATTATGATGACATCATTTTAAAAGAAGATGATACAATTGAAGTCATCGGAA
CGGTCATTACCTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(22-70)

Peptidase S24-like (Peptidase_S24)

(184-296)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  irvR Streptococcus mutans UA159

99.327

100

0.993