Detailed information NTG0519082

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: KZ799_RS13535
• Genome accession: NZ_CP080281
• Coordinates: 2929227..2930231 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain UNC_PaerCF17
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2924227..2935231

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KZ799_RS13505 (KZ799_13505)	fghA	2924320..2925171 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
KZ799_RS13510 (KZ799_13510)	ispF	2925242..2925715 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
KZ799_RS13515 (KZ799_13515)	truD	2925712..2926779 (+)	1068	WP_076938863.1	tRNA pseudouridine(13) synthase TruD	-
KZ799_RS13520 (KZ799_13520)	surE	2926767..2927516 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
KZ799_RS13525 (KZ799_13525)	-	2927549..2928184 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
KZ799_RS13530 (KZ799_13530)	-	2928230..2929122 (+)	893	Protein_2671	peptidoglycan DD-metalloendopeptidase family protein	-
KZ799_RS13535 (KZ799_13535)	rpoS	2929227..2930231 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
KZ799_RS13540 (KZ799_13540)	fdxA	2930657..2930980 (-)	324	WP_003119354.1	ferredoxin FdxA	-
KZ799_RS13545 (KZ799_13545)	mutS	2931047..2933614 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
KZ799_RS13550 (KZ799_13550)	-	2933740..2934747 (-)	1008	WP_003092265.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=519082 KZ799_RS13535 WP_003113871.1 2929227..2930231(+) (rpoS) [Pseudomonas aeruginosa strain UNC_PaerCF17]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=519082 KZ799_RS13535 WP_003113871.1 2929227..2930231(+) (rpoS) [Pseudomonas aeruginosa strain UNC_PaerCF17]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATTCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653