Detailed information NTG0519038

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: I9H06_RS21200
• Genome accession: NZ_CP066267
• Coordinates: 4648938..4650305 (-)
• Length: 455 a.a.
• NCBI ID: WP_122325003.1
• Uniprot ID: -
• Organism: Pseudomonas tremae strain PA-1-12B
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 4643938..4655305

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I9H06_RS21180 (I9H06_21095)	yjiA	4644892..4645869 (-)	978	WP_005894293.1	GTPase	-
I9H06_RS21185 (I9H06_21100)	-	4645965..4646162 (-)	198	WP_002555232.1	YbdD/YjiX family protein	-
I9H06_RS21190 (I9H06_21105)	-	4646190..4648265 (-)	2076	WP_005894294.1	carbon starvation CstA family protein	-
I9H06_RS21195 (I9H06_21110)	-	4648550..4648924 (+)	375	WP_005894295.1	PilZ domain-containing protein	-
I9H06_RS21200 (I9H06_21115)	radA	4648938..4650305 (-)	1368	WP_122325003.1	DNA repair protein RadA	Machinery gene
I9H06_RS21205	-	4650304..4650486 (+)	183	WP_144106539.1	hypothetical protein	-
I9H06_RS21210 (I9H06_21120)	mscL	4650500..4650946 (+)	447	WP_005894296.1	large-conductance mechanosensitive channel protein MscL	-
I9H06_RS21215 (I9H06_21125)	-	4651119..4651895 (-)	777	WP_122325005.1	ferredoxin--NADP reductase	-
I9H06_RS21220 (I9H06_21130)	-	4652232..4652465 (+)	234	WP_005894298.1	helix-turn-helix transcriptional regulator	-
I9H06_RS21225 (I9H06_21135)	-	4652594..4653718 (+)	1125	WP_122325006.1	methyltransferase	-
I9H06_RS21230 (I9H06_21140)	-	4653813..4653980 (-)	168	WP_005894301.1	DUF2474 domain-containing protein	-
I9H06_RS21235 (I9H06_21145)	cydB	4654002..4655009 (-)	1008	WP_024671633.1	cytochrome d ubiquinol oxidase subunit II	-

Sequence

Protein

• Length: 455 a.a.
• Molecular weight: 48853.43 Da
• Isoelectric Point: 7.1316

>NTDB_id=519038 I9H06_RS21200 WP_122325003.1 4648938..4650305(-) (radA) [Pseudomonas tremae strain PA-1-12B]
MAKAKRLYGCTECGATFPKWAGQCADCGAWNTLVETMIESGAAAPPSGRTGWTGSQAQIRTLAEVSVEEIPRFSTNSAEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIAQRMPALYVTGEESQQQVAMRARRLGLPQEKLRVMTETCIETIIA
TAKVEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHMS
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPPGLQIIAVTRLEQALDALFE

Nucleotide

• Length: 1368 bp

>NTDB_id=519038 I9H06_RS21200 WP_122325003.1 4648938..4650305(-) (radA) [Pseudomonas tremae strain PA-1-12B]
ATGGCCAAGGCCAAACGCTTGTACGGCTGCACCGAGTGTGGCGCGACGTTTCCCAAGTGGGCGGGCCAGTGCGCTGATTG
CGGCGCCTGGAACACACTGGTCGAAACCATGATTGAGAGTGGTGCCGCTGCGCCCCCCAGTGGACGCACGGGCTGGACCG
GTTCGCAGGCGCAGATCAGAACCCTGGCAGAAGTCAGCGTCGAAGAGATCCCGCGTTTCTCCACCAACTCCGCCGAGCTG
GATCGCGTGCTCGGTGGCGGTCTGGTAGACGGTTCGGTGGTGTTGATCGGCGGTGATCCCGGCATCGGTAAATCAACCAT
TCTGCTTCAGACACTGTGCAACATTGCGCAACGCATGCCTGCCCTGTATGTCACTGGTGAGGAATCCCAACAGCAAGTGG
CCATGCGCGCACGACGCCTTGGGTTGCCGCAGGAAAAACTGCGCGTCATGACCGAAACCTGCATCGAGACGATCATTGCC
ACAGCCAAGGTCGAAAAGCCGAAAGTGATGGTGATCGACTCGATCCAGACGATCTTTACCGAACAGTTGCAATCCGCACC
GGGTGGCGTATCGCAGGTTCGTGAAAGCGCCGCCTTGCTGGTGCGCTACGCCAAACAAAGCGGCACCGCGATCTTTCTGG
TGGGTCACGTTACCAAGGAAGGCGCGCTGGCCGGTCCACGCGTGCTGGAGCACATGGTCGACACTGTGTTGTATTTCGAA
GGCGAGTCGGACGGCCGCCTGCGCCTGTTGCGGGCCGTGAAGAATCGCTTCGGTGCCGTGAACGAGCTGGGCGTGTTCGG
CATGACCGACAAGGGCTTGAAGGAAGTCTCCAATCCGTCGGCGATTTTCCTGACCCGTGCGCAGGAAGAAGTACCGGGCA
GTGTGGTCATGGCTACGTGGGAAGGTACGCGACCCATGCTGGTGGAAGTCCAGGCACTGGTGGATGACAGCCACATGTCC
AATCCGCGCCGGGTGACACTGGGGCTCGATCAAAACCGTCTGGCGATGCTATTGGCCGTATTGCACCGGCATGGCGGCAT
TCCGACCCACGATCAGGACGTGTTCCTCAACGTGGTGGGTGGCGTGAAGGTGCTCGAGACCGCATCAGACCTGGCCTTGA
TGGCAGCGGTCATGTCCAGTCTGCGCAATAGGCCTCTGCCGCATGACCTGCTGGTGTTTGGCGAAGTGGGGTTGTCGGGT
GAGGTCAGGCCCGTGCCCAGTGGTCAGGAGCGCCTCAAGGAGGCCGCCAAGCACGGTTTCAAACGGGCCATCGTGCCGAA
AGGCAACGCGCCGAAAGAAGCACCTCCCGGCTTGCAAATCATTGCTGTCACGCGCCTGGAACAGGCTCTGGATGCGCTGT
TCGAGTAA

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (353-429)

• AAA domain (AAA_25) (73-221)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	49.123	100	0.492
radA	Streptococcus pneumoniae Rx1	46.739	100	0.473
radA	Streptococcus pneumoniae R6	46.739	100	0.473
radA	Streptococcus pneumoniae TIGR4	46.739	100	0.473
radA	Streptococcus pneumoniae D39	46.739	100	0.473
radA	Streptococcus mitis SK321	46.93	100	0.47
radA	Streptococcus mitis NCTC 12261	46.711	100	0.468