Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   I9H06_RS17330 Genome accession   NZ_CP066267
Coordinates   3795075..3795791 (-) Length   238 a.a.
NCBI ID   WP_080267902.1    Uniprot ID   -
Organism   Pseudomonas tremae strain PA-1-12B     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3790075..3800791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I9H06_RS17305 (I9H06_17245) murB 3791634..3792653 (-) 1020 WP_236534831.1 UDP-N-acetylmuramate dehydrogenase -
  I9H06_RS17310 (I9H06_17250) kdsB 3792688..3793452 (-) 765 WP_005892221.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  I9H06_RS17315 (I9H06_17255) - 3793449..3793634 (-) 186 WP_004884599.1 Trm112 family protein -
  I9H06_RS17320 (I9H06_17260) lpxK 3793652..3794647 (-) 996 WP_122323418.1 tetraacyldisaccharide 4'-kinase -
  I9H06_RS17325 (I9H06_17265) - 3794647..3795078 (-) 432 WP_005892218.1 biopolymer transporter ExbD -
  I9H06_RS17330 (I9H06_17270) exbB 3795075..3795791 (-) 717 WP_080267902.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  I9H06_RS17335 (I9H06_17275) - 3795834..3798049 (-) 2216 Protein_3408 DNA internalization-related competence protein ComEC/Rec2 -
  I9H06_RS17340 (I9H06_17280) - 3798186..3798974 (-) 789 WP_005892215.1 ABC transporter permease -
  I9H06_RS17345 (I9H06_17285) - 3798971..3799903 (-) 933 WP_005892214.1 ABC transporter ATP-binding protein -
  I9H06_RS17350 (I9H06_17290) - 3800083..3800706 (-) 624 WP_024670196.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 25905.46 Da        Isoelectric Point: 7.9112

>NTDB_id=519032 I9H06_RS17330 WP_080267902.1 3795075..3795791(-) (exbB) [Pseudomonas tremae strain PA-1-12B]
MLEWRQFFEGVITVWELVKSGGWMMLPIILSSIAAVGIIIERLWTLRASRIAPPHLLGQAWQWIQEKKLDNEKLKQLRAD
SPLGEILAAGLTNSRHGREIMKECIEEAAARVIHDLERYLSALGSIAAMAPLLGLLGTVLGMIDIFGSFNSTGATANAGV
LASGISKALICTASGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKIDLKSLARAGGGKKK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=519032 I9H06_RS17330 WP_080267902.1 3795075..3795791(-) (exbB) [Pseudomonas tremae strain PA-1-12B]
ATGCTAGAGTGGCGGCAATTTTTCGAGGGAGTGATCACTGTGTGGGAACTGGTCAAATCGGGCGGCTGGATGATGCTGCC
GATCATTTTAAGCTCCATCGCCGCTGTCGGCATCATTATCGAACGCCTGTGGACGCTGCGCGCCAGCCGGATTGCGCCAC
CGCATCTGTTGGGGCAGGCCTGGCAGTGGATTCAGGAAAAGAAGCTGGACAACGAAAAACTCAAGCAACTGCGCGCAGAT
TCGCCGCTGGGCGAGATCCTGGCTGCCGGTCTGACCAACTCCAGGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGA
GGCCGCCGCTCGCGTCATTCATGACCTGGAACGCTACCTGAGCGCACTGGGCTCGATCGCCGCGATGGCGCCTCTGCTCG
GTCTGCTGGGCACAGTATTGGGCATGATCGACATTTTCGGCTCGTTCAACAGCACCGGTGCCACGGCCAATGCCGGTGTG
CTGGCGAGTGGTATTTCCAAGGCGCTTATCTGTACTGCGTCTGGCCTTATCGTTGCGATCCCTGCGATCTTCTTTCACCG
CTTTCTGCAAAGCCGTGTCGATGAACTGGTGGTCGGTATGGAGCAGCAAGCGATTCGTCTGGTCGAAGTGGTTCAGGGCG
ACCGTGATGTCGATCTGATCGACGCCAAAATAGACCTCAAATCGCTAGCCAGGGCAGGCGGGGGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

77.143

88.235

0.681