Detailed information
Bioinformatically predicted
Overview
| Name | radA | Type | Machinery gene |
| Locus tag | I9H08_RS21250 | Genome accession | NZ_CP066263 |
| Coordinates | 5048571..5049938 (-) | Length | 455 a.a. |
| NCBI ID | WP_002555235.1 | Uniprot ID | A0A108WX83 |
| Organism | Pseudomonas syringae pv. syringae strain Pss9644 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| IScluster/Tn | 5050752..5052103 | 5048571..5049938 | flank | 814 |
Gene organization within MGE regions
Location: 5048571..5052103
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I9H08_RS21250 (I9H08_21185) | radA | 5048571..5049938 (-) | 1368 | WP_002555235.1 | DNA repair protein RadA | Machinery gene |
| I9H08_RS21255 (I9H08_21190) | mscL | 5050135..5050581 (+) | 447 | WP_003399960.1 | large-conductance mechanosensitive channel protein MscL | - |
| I9H08_RS21260 (I9H08_21195) | - | 5050752..5052103 (+) | 1352 | WP_248976484.1 | IS3 family transposase | - |
Sequence
Protein
Download Length: 455 a.a. Molecular weight: 48913.48 Da Isoelectric Point: 7.1316
>NTDB_id=518983 I9H08_RS21250 WP_002555235.1 5048571..5049938(-) (radA) [Pseudomonas syringae pv. syringae strain Pss9644]
MAKAKRLYGCTECGATFPKWAGQCSECGAWNTLVETMIESGAAAPPTGRTGWTGSQAQIRTLAEVSVEEIPRFSTNSTEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIAQRMPALYVTGEESQQQVAMRARRLGLPQDKLRVMTETCIETIIA
TAKVEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHMS
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPPGLQIIAVTRLEQALDALFE
MAKAKRLYGCTECGATFPKWAGQCSECGAWNTLVETMIESGAAAPPTGRTGWTGSQAQIRTLAEVSVEEIPRFSTNSTEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIAQRMPALYVTGEESQQQVAMRARRLGLPQDKLRVMTETCIETIIA
TAKVEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHMS
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPPGLQIIAVTRLEQALDALFE
Nucleotide
Download Length: 1368 bp
>NTDB_id=518983 I9H08_RS21250 WP_002555235.1 5048571..5049938(-) (radA) [Pseudomonas syringae pv. syringae strain Pss9644]
ATGGCCAAGGCCAAACGCTTGTACGGCTGCACCGAGTGCGGCGCGACATTTCCCAAGTGGGCGGGCCAGTGCAGCGAATG
CGGTGCCTGGAACACACTGGTCGAGACCATGATTGAAAGCGGTGCCGCCGCGCCGCCTACCGGGCGTACCGGCTGGACCG
GTTCCCAAGCGCAGATCAGGACCCTGGCGGAAGTCAGCGTCGAAGAAATCCCGCGCTTCTCCACCAACTCCACCGAACTG
GACAGGGTGCTCGGCGGCGGTCTGGTTGACGGTTCGGTGGTGCTGATTGGCGGCGACCCCGGCATCGGCAAGTCCACGAT
CCTCTTGCAGACGCTGTGCAACATCGCCCAGCGCATGCCCGCGCTGTATGTCACCGGTGAGGAATCCCAGCAGCAGGTCG
CCATGCGTGCCCGGCGCCTGGGGCTGCCGCAGGACAAGCTGCGGGTAATGACCGAAACCTGCATCGAGACCATCATTGCC
ACCGCCAAGGTCGAGAAGCCCAAGGTGATGGTGATCGATTCGATCCAGACGATTTTCACCGAACAGCTGCAGTCGGCCCC
TGGCGGCGTGTCGCAGGTTCGCGAAAGCGCCGCCTTGCTGGTGCGCTACGCCAAGCAGAGCGGTACGGCGATCTTCCTGG
TCGGCCACGTCACCAAGGAAGGTGCACTGGCCGGCCCGCGTGTGCTTGAGCACATGGTCGACACCGTGTTGTATTTCGAG
GGCGAATCGGACGGCCGCCTGCGTTTGCTGCGCGCGGTGAAGAACCGCTTTGGCGCGGTCAACGAGCTGGGCGTGTTCGG
CATGACCGACAAGGGCCTGAAAGAAGTCTCCAACCCGTCGGCGATTTTTCTCACCCGTGCGCAGGAAGAAGTACCGGGCA
GTGTGGTCATGGCCACCTGGGAGGGCACGCGGCCGATGCTGGTCGAGGTGCAGGCGCTGGTGGACGACAGTCACATGTCC
AATCCGCGCCGCGTAACGCTGGGTCTGGATCAGAATCGTCTGGCCATGTTGCTGGCGGTCCTGCACCGACATGGCGGCAT
TCCCACTCACGATCAGGACGTGTTTCTCAACGTAGTGGGTGGTGTGAAGGTGCTGGAAACCGCCTCCGACCTGGCCTTGA
TGGCAGCGGTGATGTCCAGCCTGCGCAATCGTCCGTTGCCGCATGACTTGCTGGTGTTCGGTGAGGTTGGGCTGTCGGGT
GAAGTCAGGCCGGTGCCCAGCGGCCAGGAGCGCCTCAAGGAGGCCGCCAAGCACGGCTTCAAGCGCGCCATCGTGCCCAA
GGGCAATGCGCCGAAGGAAGCGCCGCCCGGCTTGCAGATCATTGCCGTTACGCGCTTGGAGCAGGCCCTGGATGCGCTGT
TCGAGTAA
ATGGCCAAGGCCAAACGCTTGTACGGCTGCACCGAGTGCGGCGCGACATTTCCCAAGTGGGCGGGCCAGTGCAGCGAATG
CGGTGCCTGGAACACACTGGTCGAGACCATGATTGAAAGCGGTGCCGCCGCGCCGCCTACCGGGCGTACCGGCTGGACCG
GTTCCCAAGCGCAGATCAGGACCCTGGCGGAAGTCAGCGTCGAAGAAATCCCGCGCTTCTCCACCAACTCCACCGAACTG
GACAGGGTGCTCGGCGGCGGTCTGGTTGACGGTTCGGTGGTGCTGATTGGCGGCGACCCCGGCATCGGCAAGTCCACGAT
CCTCTTGCAGACGCTGTGCAACATCGCCCAGCGCATGCCCGCGCTGTATGTCACCGGTGAGGAATCCCAGCAGCAGGTCG
CCATGCGTGCCCGGCGCCTGGGGCTGCCGCAGGACAAGCTGCGGGTAATGACCGAAACCTGCATCGAGACCATCATTGCC
ACCGCCAAGGTCGAGAAGCCCAAGGTGATGGTGATCGATTCGATCCAGACGATTTTCACCGAACAGCTGCAGTCGGCCCC
TGGCGGCGTGTCGCAGGTTCGCGAAAGCGCCGCCTTGCTGGTGCGCTACGCCAAGCAGAGCGGTACGGCGATCTTCCTGG
TCGGCCACGTCACCAAGGAAGGTGCACTGGCCGGCCCGCGTGTGCTTGAGCACATGGTCGACACCGTGTTGTATTTCGAG
GGCGAATCGGACGGCCGCCTGCGTTTGCTGCGCGCGGTGAAGAACCGCTTTGGCGCGGTCAACGAGCTGGGCGTGTTCGG
CATGACCGACAAGGGCCTGAAAGAAGTCTCCAACCCGTCGGCGATTTTTCTCACCCGTGCGCAGGAAGAAGTACCGGGCA
GTGTGGTCATGGCCACCTGGGAGGGCACGCGGCCGATGCTGGTCGAGGTGCAGGCGCTGGTGGACGACAGTCACATGTCC
AATCCGCGCCGCGTAACGCTGGGTCTGGATCAGAATCGTCTGGCCATGTTGCTGGCGGTCCTGCACCGACATGGCGGCAT
TCCCACTCACGATCAGGACGTGTTTCTCAACGTAGTGGGTGGTGTGAAGGTGCTGGAAACCGCCTCCGACCTGGCCTTGA
TGGCAGCGGTGATGTCCAGCCTGCGCAATCGTCCGTTGCCGCATGACTTGCTGGTGTTCGGTGAGGTTGGGCTGTCGGGT
GAAGTCAGGCCGGTGCCCAGCGGCCAGGAGCGCCTCAAGGAGGCCGCCAAGCACGGCTTCAAGCGCGCCATCGTGCCCAA
GGGCAATGCGCCGAAGGAAGCGCCGCCCGGCTTGCAGATCATTGCCGTTACGCGCTTGGAGCAGGCCCTGGATGCGCTGT
TCGAGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radA | Bacillus subtilis subsp. subtilis str. 168 |
49.123 |
100 |
0.492 |
| radA | Streptococcus pneumoniae Rx1 |
46.739 |
100 |
0.473 |
| radA | Streptococcus pneumoniae R6 |
46.739 |
100 |
0.473 |
| radA | Streptococcus pneumoniae TIGR4 |
46.739 |
100 |
0.473 |
| radA | Streptococcus pneumoniae D39 |
46.739 |
100 |
0.473 |
| radA | Streptococcus mitis SK321 |
46.93 |
100 |
0.47 |
| radA | Streptococcus mitis NCTC 12261 |
46.711 |
100 |
0.468 |