Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   H9K57_RS21840 Genome accession   NZ_CP066247
Coordinates   1180004..1181101 (+) Length   365 a.a.
NCBI ID   WP_025516436.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain DHO76     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1175004..1186101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9K57_RS21825 (H9K57_21725) - 1175915..1176970 (+) 1056 WP_015313427.1 HlyD family secretion protein -
  H9K57_RS21830 (H9K57_21730) - 1176971..1177426 (+) 456 WP_005477342.1 MarR family transcriptional regulator -
  H9K57_RS21835 (H9K57_21735) luxQ 1177427..1180003 (+) 2577 WP_005463469.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  H9K57_RS21840 (H9K57_21740) luxP 1180004..1181101 (+) 1098 WP_025516436.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  H9K57_RS21845 (H9K57_21745) - 1181102..1181422 (+) 321 WP_005463466.1 GIY-YIG nuclease family protein -
  H9K57_RS21850 (H9K57_21750) - 1181423..1182073 (+) 651 WP_005499314.1 YceH family protein -
  H9K57_RS21855 (H9K57_21755) - 1182077..1182292 (+) 216 WP_005477197.1 hypothetical protein -
  H9K57_RS21860 (H9K57_21760) - 1182407..1182721 (+) 315 WP_005453573.1 DUF496 family protein -
  H9K57_RS21865 (H9K57_21765) - 1182722..1184059 (+) 1338 WP_248378193.1 MATE family efflux transporter -
  H9K57_RS21870 (H9K57_21770) - 1184060..1185037 (+) 978 WP_024700033.1 Gfo/Idh/MocA family oxidoreductase -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41367.73 Da        Isoelectric Point: 5.0568

>NTDB_id=518909 H9K57_RS21840 WP_025516436.1 1180004..1181101(+) (luxP) [Vibrio parahaemolyticus strain DHO76]
MNKALVLSLISIVGMSPASQASQVLNGYWAYQEFLNEFPEQKHLTDALAAAVRDDPVPIAPEKRHPLKISVVYPGQQISD
YWIRNIDAFEKRLDKLNIDYQINQVFTRPNADIKQQSLSLMEALKSNSDYLIFTLDTTRHRKFVEHVLDSTKTKLILQNI
TTPVREWETRQPFMYVGFDHAEGSRELAVEFGKQFPKNTHYSVLYFSEGYISDIRGNTFIHQVNQDSQFELQSAYYTKAT
KQSGYEAAKASLKKYPDVEFIYACSTDVALGAVEALSELGREDVMINGWGGGSAELDAILKGELDITVMRMNDDTGIAMA
EAIKWDLEGKPVPTVYSGDFEVVTKSDSPERIEALRKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=518909 H9K57_RS21840 WP_025516436.1 1180004..1181101(+) (luxP) [Vibrio parahaemolyticus strain DHO76]
ATGAATAAAGCGTTAGTATTGTCCCTGATTTCAATTGTCGGCATGTCTCCGGCTTCACAAGCCTCTCAGGTTCTTAACGG
CTACTGGGCGTATCAAGAATTCTTAAATGAATTCCCAGAACAGAAACACTTAACGGATGCTCTGGCTGCGGCCGTGAGAG
ACGATCCTGTACCTATTGCCCCTGAAAAAAGACACCCATTAAAAATCTCCGTTGTTTATCCAGGGCAGCAGATTTCTGAT
TACTGGATAAGAAACATCGACGCGTTTGAGAAGCGCTTAGATAAACTCAATATTGATTACCAAATCAATCAAGTGTTTAC
GCGACCGAACGCCGATATCAAACAACAAAGCCTTTCTTTGATGGAAGCACTAAAAAGCAATTCCGACTACTTAATTTTTA
CACTCGATACGACCCGACATCGTAAGTTTGTCGAACATGTTTTAGATTCCACCAAAACCAAACTTATCCTGCAAAATATC
ACGACGCCAGTCCGTGAATGGGAAACTCGACAGCCTTTTATGTACGTCGGTTTCGATCACGCTGAAGGCAGTCGCGAACT
CGCTGTGGAGTTTGGCAAGCAGTTCCCGAAAAATACCCATTACAGCGTTTTGTACTTCTCTGAAGGCTACATTAGCGATA
TCCGTGGTAACACATTCATTCACCAAGTGAACCAAGACAGTCAGTTTGAACTACAATCTGCTTACTATACAAAAGCGACA
AAACAGTCTGGGTATGAAGCTGCAAAAGCCAGTTTGAAAAAATACCCAGATGTGGAGTTCATTTATGCTTGTTCTACCGA
CGTTGCGTTAGGTGCCGTCGAAGCACTGTCTGAACTTGGCCGTGAAGACGTAATGATTAATGGCTGGGGCGGTGGTTCTG
CTGAGCTAGACGCTATCTTAAAAGGGGAGTTAGATATCACCGTCATGCGTATGAATGATGATACTGGCATTGCGATGGCA
GAGGCGATCAAATGGGATTTGGAAGGTAAGCCTGTACCAACGGTGTACTCTGGGGACTTCGAAGTTGTGACCAAATCAGA
TTCCCCTGAGCGAATTGAAGCTCTCAGAAAACGTGCATTTAGATACTCAGATAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.286

99.726

0.641