Detailed information NTG0518892

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: H9K57_RS13340
• Genome accession: NZ_CP066246
• Coordinates: 2793560..2794549 (-)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain DHO76
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2788560..2799549

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H9K57_RS13325 (H9K57_13210)	recA	2789109..2790152 (-)	1044	WP_005478550.1	recombinase RecA	Machinery gene
H9K57_RS13330 (H9K57_13215)	pncC	2790353..2790835 (-)	483	WP_021450025.1	nicotinamide-nucleotide amidase	-
H9K57_RS13335 (H9K57_13220)	mutS	2790920..2793481 (+)	2562	WP_140309466.1	DNA mismatch repair protein MutS	-
H9K57_RS13340 (H9K57_13225)	rpoS	2793560..2794549 (-)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
H9K57_RS13345 (H9K57_13230)	-	2794630..2795553 (-)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
H9K57_RS13350 (H9K57_13235)	-	2795568..2796194 (-)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
H9K57_RS13355 (H9K57_13240)	surE	2796194..2796970 (-)	777	WP_248377487.1	5'/3'-nucleotidase SurE	-
H9K57_RS13360 (H9K57_13245)	truD	2796970..2798013 (-)	1044	WP_248377489.1	tRNA pseudouridine(13) synthase TruD	-
H9K57_RS13365 (H9K57_13250)	ispF	2798060..2798536 (-)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
H9K57_RS13370 (H9K57_13255)	ispD	2798554..2799258 (-)	705	WP_248377491.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
H9K57_RS13375 (H9K57_13260)	ftsB	2799260..2799541 (-)	282	WP_005455577.1	cell division protein FtsB	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=518892 H9K57_RS13340 WP_005478537.1 2793560..2794549(-) (rpoS) [Vibrio parahaemolyticus strain DHO76]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=518892 H9K57_RS13340 WP_005478537.1 2793560..2794549(-) (rpoS) [Vibrio parahaemolyticus strain DHO76]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGATAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTGCTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCTGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACTTGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGTAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAACAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGCTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTCGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851