Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   KZ312_RS20475 Genome accession   NZ_CP080260
Coordinates   4273765..4274502 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 135     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4268765..4279502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZ312_RS20460 (KZ312_20460) clpC 4269219..4271792 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  KZ312_RS20465 (KZ312_20465) yfiH 4271922..4272653 (-) 732 WP_000040155.1 purine nucleoside phosphorylase YfiH -
  KZ312_RS20470 (KZ312_20470) rluD 4272650..4273630 (-) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KZ312_RS20475 (KZ312_20475) comL 4273765..4274502 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  KZ312_RS20480 (KZ312_20480) raiA 4274773..4275114 (+) 342 WP_059327700.1 ribosome-associated translation inhibitor RaiA -
  KZ312_RS20485 (KZ312_20485) pheL 4275218..4275265 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  KZ312_RS20490 (KZ312_20490) pheA 4275365..4276525 (+) 1161 WP_000200119.1 bifunctional chorismate mutase/prephenate dehydratase -
  KZ312_RS20495 (KZ312_20495) tyrA 4276568..4277689 (-) 1122 WP_000225203.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  KZ312_RS20500 (KZ312_20500) aroF 4277700..4278770 (-) 1071 WP_001168043.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  KZ312_RS20505 (KZ312_20505) yfiL 4278979..4279344 (+) 366 WP_001296308.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=518892 KZ312_RS20475 WP_000197686.1 4273765..4274502(+) (comL) [Escherichia coli strain 135]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=518892 KZ312_RS20475 WP_000197686.1 4273765..4274502(+) (comL) [Escherichia coli strain 135]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTCGATGACAGTGCACTGCAAGGGTTCTTTGGCGTTGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGTGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCTGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376