Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   H9K57_RS13225 Genome accession   NZ_CP066246
Coordinates   2771848..2772366 (-) Length   172 a.a.
NCBI ID   WP_025508497.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain DHO76     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2766848..2777366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9K57_RS13200 (H9K57_13085) rimM 2766957..2767505 (-) 549 WP_005462552.1 ribosome maturation factor RimM -
  H9K57_RS13205 (H9K57_13090) rpsP 2767534..2767782 (-) 249 WP_005379962.1 30S ribosomal protein S16 -
  H9K57_RS13210 (H9K57_13095) ffh 2767992..2769374 (-) 1383 WP_005462555.1 signal recognition particle protein -
  H9K57_RS13215 (H9K57_13100) - 2769587..2770381 (+) 795 WP_005462565.1 inner membrane protein YpjD -
  H9K57_RS13220 (H9K57_13105) - 2770507..2771787 (+) 1281 WP_005462557.1 CNNM domain-containing protein -
  H9K57_RS13225 (H9K57_13110) luxS 2771848..2772366 (-) 519 WP_025508497.1 S-ribosylhomocysteine lyase Regulator
  H9K57_RS13230 (H9K57_13115) - 2772433..2773038 (-) 606 WP_023624249.1 hypothetical protein -
  H9K57_RS13235 (H9K57_13120) gshA 2773063..2774631 (-) 1569 WP_131168975.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19006.71 Da        Isoelectric Point: 4.7134

>NTDB_id=518889 H9K57_RS13225 WP_025508497.1 2771848..2772366(-) (luxS) [Vibrio parahaemolyticus strain DHO76]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAQQIAKSILAAGVSVNKNDELA
LPESMLKELRVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=518889 H9K57_RS13225 WP_025508497.1 2771848..2772366(-) (luxS) [Vibrio parahaemolyticus strain DHO76]
ATGCCTTTACTCGATAGCTTCACCGTAGACCACACTCGCATGAATGCGCCAGCAGTGCGTGTCGCGAAAACCATGCAAAC
TCCAAAAGGAGATACCATTACGGTTTTCGACTTACGCTTCACTGCGCCTAACAAAGACATTCTTTCAGAGAAAGGCATTC
ATACACTAGAGCACTTGTACGCAGGTTTCATGCGCAATCACCTAAATGGTGACAGTGTGGAAATCATTGATATCTCACCG
ATGGGATGTCGCACTGGTTTTTACATGAGTCTCATTGGTACGCCTTCTGAACAGCAAGTCGCAGACGCATGGCTTGCTTC
TATGGAAGATGTGCTAAAAGTGGAAAGCCAGAACAAAATCCCTGAGCTAAATGAGTACCAGTGTGGTACTGCAGCGATGC
ATTCTTTAGAAGAAGCACAGCAAATTGCCAAGAGCATTCTAGCCGCAGGTGTGTCTGTTAATAAAAACGACGAGTTGGCT
TTACCAGAATCAATGCTAAAAGAGCTGCGCGTAGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.304

99.419

0.878