Detailed information NTG0518870

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: H9K57_RS01200
• Genome accession: NZ_CP066246
• Coordinates: 255313..256359 (-)
• Length: 348 a.a.
• NCBI ID: WP_254894148.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain DHO76
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 250313..261359

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H9K57_RS01170 (H9K57_01175)	zapB	250482..250724 (+)	243	WP_005481417.1	cell division protein ZapB	-
H9K57_RS01175 (H9K57_01180)	rraA	250829..251341 (-)	513	WP_005457192.1	ribonuclease E activity regulator RraA	-
H9K57_RS01180 (H9K57_01185)	-	251418..252335 (-)	918	WP_248377660.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
H9K57_RS01185 (H9K57_01190)	hslU	252520..253851 (-)	1332	WP_025441237.1	HslU--HslV peptidase ATPase subunit	-
H9K57_RS01190 (H9K57_01195)	hslV	253875..254426 (-)	552	WP_248377662.1	ATP-dependent protease subunit HslV	-
H9K57_RS01195 (H9K57_01200)	ftsN	254591..255136 (-)	546	WP_005481405.1	cell division protein FtsN	-
H9K57_RS01200 (H9K57_01205)	cytR	255313..256359 (-)	1047	WP_254894148.1	DNA-binding transcriptional regulator CytR	Regulator
H9K57_RS01205 (H9K57_01210)	priA	256652..258856 (-)	2205	WP_248377663.1	primosomal protein N'	-
H9K57_RS01210 (H9K57_01215)	rpmE	259151..259372 (+)	222	WP_005457203.1	50S ribosomal protein L31	-
H9K57_RS01215 (H9K57_01220)	rpsJ	259830..260141 (+)	312	WP_004410492.1	30S ribosomal protein S10	-
H9K57_RS01220 (H9K57_01225)	rplC	260156..260785 (+)	630	WP_005456132.1	50S ribosomal protein L3	-

Sequence

Protein

• Length: 348 a.a.
• Molecular weight: 38445.17 Da
• Isoelectric Point: 6.7430

>NTDB_id=518870 H9K57_RS01200 WP_254894148.1 255313..256359(-) (cytR) [Vibrio parahaemolyticus strain DHO76]
MTSSWQKFERLNTMATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVP
DICDPYFSEIIRGIEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEF
APELELPTVHIDNLTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKDPQYSVITEFSFDGGAKA
VRKLLELPEPPTAIFCHCDTMAIGAIQEAKRLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELL
KGHDVHSGSRLLETKLVVRGSAAPPQRA

Nucleotide

• Length: 1047 bp

>NTDB_id=518870 H9K57_RS01200 WP_254894148.1 255313..256359(-) (cytR) [Vibrio parahaemolyticus strain DHO76]
ATAACGTCATCTTGGCAAAAATTTGAGAGGTTAAACACTATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTC
GACAGCTACGGTATCTCGAGCATTAATGAATCCAGAAAAAGTCTCTTCTTCAACAAGAAAAAGAGTCGAAGATGCCGTCC
TTGAAGCGGGCTATTCTCCAAATTCATTAGCGCGTAATCTACGTAGAAACGAATCAAAAACGATTGTTACCATCGTTCCT
GACATCTGTGATCCTTACTTTTCTGAAATCATTCGTGGTATCGAAGACGCAGCTATGGAACATGGCTACCTCGTACTGCT
CGGTGACAGCGGCCAGCAGAAAAAGCGTGAAAGCTCGTTTGTGAATCTAGTGTTCACCAAACAAGCCGATGGCATGTTAC
TGCTTGGTACCGACCTGCCATTTGATGTCAGCAAGCCAGAACAGAAAAACCTGCCACCAATGGTCATGGCTTGTGAGTTT
GCGCCAGAGCTAGAATTACCAACCGTGCACATTGACAACCTAACGTCTGCTTTTGAAGCGGTCAATTACCTAACTCAACT
TGGCCATAAACGCATAGCACAAATTTCAGGGCCAGACACAGCGGTATTGTGCCAGTTCCGCCAGCAAGGTTATCAACAAG
CCTTGCGTCGCGCGGGGATCAGTAAAGACCCACAATACAGTGTTATCACTGAGTTTTCTTTTGACGGCGGCGCGAAAGCT
GTACGTAAGTTGCTAGAACTTCCAGAGCCACCAACTGCGATTTTCTGCCACTGCGACACCATGGCAATCGGCGCAATCCA
AGAAGCCAAACGACTCGGTCTGCGCGTTCCGCAAGATTTGTCAGTGGTTGGTTTCGATGATATCAACTTTGCTCAATACT
GCGATCCACCGTTAACGACCATTTCTCAACCTCGTTATGAAATTGGCCGCCAAGCGATGCTTATGATGCTTGAACTACTT
AAAGGCCATGACGTTCATTCAGGTTCACGCTTACTAGAAACTAAGCTTGTTGTCCGTGGTAGCGCAGCGCCACCGCAACG
CGCCTAA

Domains

Predicted by InterproScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (181-341)

• Bacterial regulatory proteins, lacI family (LacI) (16-61)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	100	100	1
cytR	Vibrio cholerae C6706	90.719	95.977	0.871