Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   SCIM_RS07285 Genome accession   NC_018073
Coordinates   1492674..1494440 (-) Length   588 a.a.
NCBI ID   WP_003075874.1    Uniprot ID   A0A930WGD4
Organism   Streptococcus intermedius JTH08     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1487674..1499440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCIM_RS07270 (SCIM_1308) - 1488880..1490277 (+) 1398 WP_003075777.1 glycoside hydrolase family 1 protein -
  SCIM_RS07275 (SCIM_1309) - 1490426..1490839 (-) 414 WP_003075980.1 cupin domain-containing protein -
  SCIM_RS07280 (SCIM_1310) rcrQ 1490924..1492684 (-) 1761 WP_003076199.1 ABC transporter ATP-binding protein Regulator
  SCIM_RS07285 (SCIM_1311) rcrP 1492674..1494440 (-) 1767 WP_003075874.1 ABC transporter ATP-binding protein Regulator
  SCIM_RS07290 (SCIM_1312) - 1494433..1494891 (-) 459 WP_003074423.1 MarR family winged helix-turn-helix transcriptional regulator -
  SCIM_RS07295 (SCIM_1313) - 1495063..1496250 (-) 1188 WP_003075855.1 NADH-dependent flavin oxidoreductase -
  SCIM_RS07300 (SCIM_1314) - 1496517..1496927 (-) 411 WP_003075948.1 peptide deformylase -
  SCIM_RS07305 (SCIM_1315) scrK 1496993..1497892 (-) 900 WP_003076084.1 fructokinase ScrK -

Sequence

Protein


Download         Length: 588 a.a.        Molecular weight: 65380.12 Da        Isoelectric Point: 6.3910

>NTDB_id=51884 SCIM_RS07285 WP_003075874.1 1492674..1494440(-) (rcrP) [Streptococcus intermedius JTH08]
MVKLFKRLTVKEVGMIIISILFTCLAVYLDLEVPTYISKITELLQTRGTVISDLWNPGLKMIGLSFASFLSAVVVGFIAA
RLAASFTTSLRSDIFNRVLDYSDAEIKRFSIPSLLTRTTNDLTQIQLMITMGLQVVTRGPIMAIWAITKIIGKSEYWLWA
VIVAVIVNMIMTTVLMTLAFPKQSVIQRLTDKLNSITRESLTGLRVVRAYNAEDYQDDKFAGANDEVTRLNLFVNRLMAI
LNPIMMGISSGLTLAIYWIGAYLIQDAALSERLPIFSDMVVFMSYAMQVVMGFMLMAALFIVLPRTLVSAGRINEVLDLH
STIESPMQAKTAKDIKGEVVFDNVSFRYTKNSEAVIEHVSFTAKAGETVAFIGSTGSGKSTLISLIPRFYDVTEGRILVD
GVNVKDYQLEDLHNKIGYIPQKAVLFSGDIKSNLDFGQSNESPLDDEKMWSALDLAQAKSFVEEKEGGLHSEVAQSGTNF
SGGQKQRLAIARALARKPEILIFDDSFSALDYKTDRILREELAKKVKATTRLIVAQRISTIMDADQILVLDKGKVVGQGT
HKELLETNEVYQEIAYSQLSKEELENGK

Nucleotide


Download         Length: 1767 bp        

>NTDB_id=51884 SCIM_RS07285 WP_003075874.1 1492674..1494440(-) (rcrP) [Streptococcus intermedius JTH08]
ATGGTTAAATTGTTTAAACGTTTAACTGTTAAAGAAGTAGGGATGATTATCATCAGTATCTTATTTACTTGTTTGGCAGT
TTACTTGGACTTAGAGGTTCCAACCTATATTTCAAAAATTACGGAACTCCTACAGACGAGAGGAACAGTTATTTCTGATT
TGTGGAATCCGGGCTTGAAAATGATTGGATTGTCATTTGCTAGTTTTCTCAGTGCTGTGGTCGTTGGTTTTATTGCGGCT
AGATTGGCAGCTAGCTTTACAACGAGCTTGCGCTCAGATATTTTCAATCGTGTACTGGATTATTCAGATGCTGAGATTAA
GAGATTTTCTATTCCAAGTCTTTTAACGCGGACAACCAATGATCTTACGCAAATTCAGCTTATGATTACTATGGGCTTGC
AAGTCGTGACTCGTGGGCCGATTATGGCGATTTGGGCGATTACAAAAATCATTGGAAAATCAGAATACTGGCTATGGGCA
GTTATTGTCGCAGTTATTGTGAATATGATCATGACGACAGTTTTGATGACGTTGGCTTTTCCAAAGCAATCTGTTATTCA
ACGATTGACTGATAAGTTAAATAGTATTACGCGTGAAAGTCTAACAGGGCTTCGTGTTGTTCGGGCTTACAATGCTGAAG
ACTATCAAGATGATAAATTTGCAGGGGCAAATGATGAAGTGACTCGGTTGAATCTCTTTGTTAATCGGCTCATGGCGATT
TTAAATCCGATTATGATGGGGATTTCGAGTGGTTTGACCTTGGCAATATACTGGATTGGTGCTTACTTGATTCAAGATGC
AGCTTTATCAGAACGCTTGCCAATCTTTAGCGACATGGTTGTCTTTATGTCCTATGCTATGCAGGTCGTAATGGGCTTCA
TGCTCATGGCTGCTCTGTTTATCGTTCTTCCTCGTACCTTGGTGTCTGCGGGGCGGATTAATGAGGTACTTGATTTGCAT
TCAACGATTGAATCTCCAATGCAAGCAAAAACAGCTAAAGATATCAAAGGTGAAGTGGTATTTGACAATGTTTCTTTCCG
CTATACTAAAAACTCTGAGGCAGTCATTGAACATGTTAGCTTTACGGCTAAAGCGGGCGAAACGGTGGCTTTCATCGGAT
CAACTGGTTCTGGGAAATCAACCCTAATTAGTTTAATTCCTCGTTTCTATGATGTGACAGAAGGAAGAATTTTAGTAGAT
GGCGTGAATGTAAAAGATTATCAGTTGGAAGATTTGCATAATAAAATTGGCTACATTCCACAAAAAGCTGTTCTCTTTTC
TGGTGATATAAAGAGTAATTTAGACTTTGGACAAAGCAATGAAAGTCCATTGGATGATGAAAAAATGTGGTCTGCGTTGG
ACTTGGCACAAGCGAAATCATTTGTTGAAGAAAAAGAAGGTGGTCTACACTCAGAGGTTGCACAAAGCGGAACCAATTTC
TCTGGTGGTCAAAAACAGCGGTTGGCGATTGCGCGTGCACTTGCTAGGAAACCTGAAATTCTGATTTTTGACGATTCATT
TTCAGCACTGGACTATAAAACAGACCGTATTTTGCGAGAAGAATTGGCGAAAAAAGTGAAAGCTACAACCAGATTGATTG
TAGCTCAGCGGATTTCAACGATCATGGATGCTGATCAGATCTTGGTGTTGGATAAAGGGAAGGTTGTTGGGCAAGGGACT
CACAAAGAGCTACTAGAGACCAACGAAGTTTATCAAGAAATTGCTTACTCACAATTATCAAAGGAGGAATTGGAAAATGG
AAAATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(16-291)

ABC transporter (ABC_tran)

(357-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

70.333

100

0.718

Multiple sequence alignment