Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   SCIM_RS07280 Genome accession   NC_018073
Coordinates   1490924..1492684 (-) Length   586 a.a.
NCBI ID   WP_003076199.1    Uniprot ID   -
Organism   Streptococcus intermedius JTH08     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1485924..1497684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCIM_RS07260 (SCIM_1306) - 1486710..1487435 (-) 726 WP_003076141.1 GntR family transcriptional regulator -
  SCIM_RS07265 (SCIM_1307) celB 1487469..1488737 (-) 1269 WP_003076131.1 PTS cellobiose transporter subunit IIC -
  SCIM_RS07270 (SCIM_1308) - 1488880..1490277 (+) 1398 WP_003075777.1 glycoside hydrolase family 1 protein -
  SCIM_RS07275 (SCIM_1309) - 1490426..1490839 (-) 414 WP_003075980.1 cupin domain-containing protein -
  SCIM_RS07280 (SCIM_1310) rcrQ 1490924..1492684 (-) 1761 WP_003076199.1 ABC transporter ATP-binding protein Regulator
  SCIM_RS07285 (SCIM_1311) rcrP 1492674..1494440 (-) 1767 WP_003075874.1 ABC transporter ATP-binding protein Regulator
  SCIM_RS07290 (SCIM_1312) - 1494433..1494891 (-) 459 WP_003074423.1 MarR family winged helix-turn-helix transcriptional regulator -
  SCIM_RS07295 (SCIM_1313) - 1495063..1496250 (-) 1188 WP_003075855.1 NADH-dependent flavin oxidoreductase -
  SCIM_RS07300 (SCIM_1314) - 1496517..1496927 (-) 411 WP_003075948.1 peptide deformylase -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 65213.48 Da        Isoelectric Point: 6.6736

>NTDB_id=51883 SCIM_RS07280 WP_003076199.1 1490924..1492684(-) (rcrQ) [Streptococcus intermedius JTH08]
MENKKSSLFSQVKPYIKGFQFPLLVAFVGVILSSVITVYGPVKLKEITNLITEGMRSRIDLKAISNIALFLAVLYVVGAV
LNYMQSFIISSVVQHFSKRLRTAIAEKINKLPLRYFDSHSQGDTLSRVTNDVDTVGQSLNQSLGTVISSSLLLIAVLFMM
FYNNVVLSFVTIGSVLIGFVFVALIMGKSQRFFRAQQENLASVNGYVEEMYSGHNVIVSYNATEESKKAFQMLNTKLYNS
MWKSQFISGIMMPLMIFTGNFGYVMVVLVGASMALNGDVTMGTIVAFMVYVRTFSQPLSQIAQGITTLQQASAAMGRVFE
FLAELEMENDEHKSQQLATLKGDVTFDNVFFGYNPDRTIIHDFSAKAKAGQKIAIVGPTGAGKTTIVNLLMKFYEIEKGR
ITIDGVDTKQMKRSEVHDAFSMVLQDTWLFEGTIKENLIYNQKNISDEAVVAATKAVGVHHFIKTLPKGYDTVLDDTVSL
SVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMRDGNIIEQGN
HNQLMEENGFYADLYNSQFDEEAEYA

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=51883 SCIM_RS07280 WP_003076199.1 1490924..1492684(-) (rcrQ) [Streptococcus intermedius JTH08]
ATGGAAAATAAAAAATCATCTTTATTTAGCCAAGTGAAACCCTATATCAAAGGATTCCAGTTTCCCTTGCTCGTTGCGTT
TGTGGGAGTAATACTATCTAGTGTTATCACGGTTTATGGTCCGGTCAAATTAAAAGAAATTACCAATCTCATCACAGAAG
GAATGAGAAGTCGGATTGATCTAAAGGCTATCTCTAATATTGCTCTTTTCTTAGCAGTTTTATATGTGGTGGGTGCTGTA
TTAAATTATATGCAATCCTTTATTATTTCGTCCGTCGTTCAGCATTTTTCAAAACGTTTACGGACAGCCATTGCGGAGAA
AATTAATAAATTACCCTTGCGGTATTTTGATAGTCATTCGCAAGGGGACACTCTTTCACGAGTCACTAATGACGTGGATA
CTGTTGGACAATCTCTGAACCAAAGTTTAGGAACAGTGATTTCATCAAGTTTGCTTCTCATTGCTGTTCTCTTTATGATG
TTTTATAACAACGTGGTTCTATCCTTTGTAACGATTGGATCGGTTTTGATTGGTTTTGTCTTTGTTGCGTTGATTATGGG
CAAATCACAACGGTTTTTCCGTGCACAACAAGAGAATCTTGCTAGTGTCAATGGATATGTGGAAGAGATGTATTCTGGTC
ACAATGTCATTGTCAGCTACAATGCTACTGAGGAATCAAAAAAAGCCTTTCAAATGCTTAATACGAAGCTTTATAACAGT
ATGTGGAAGTCCCAATTTATTTCTGGGATTATGATGCCGTTAATGATATTTACAGGGAACTTCGGTTATGTTATGGTCGT
ATTGGTTGGAGCGAGCATGGCATTGAATGGTGATGTCACGATGGGGACGATTGTTGCCTTTATGGTATATGTACGGACTT
TTTCTCAACCATTGTCCCAAATTGCACAAGGGATTACCACTCTTCAACAAGCTAGTGCTGCTATGGGGCGTGTATTTGAG
TTTTTAGCAGAGCTGGAAATGGAAAACGATGAGCACAAGTCTCAACAGCTCGCAACTTTAAAGGGTGATGTTACCTTTGA
TAATGTATTCTTTGGCTACAATCCGGATCGAACAATTATTCATGATTTTTCTGCCAAGGCAAAAGCCGGCCAAAAGATTG
CTATTGTTGGTCCGACCGGTGCTGGGAAAACGACGATTGTCAATCTGTTGATGAAATTTTATGAAATTGAAAAAGGGCGG
ATTACTATTGATGGTGTTGATACCAAGCAGATGAAACGTTCTGAAGTGCATGATGCTTTCTCAATGGTCCTTCAAGACAC
TTGGTTATTTGAGGGAACGATTAAAGAAAATTTGATTTACAATCAGAAGAATATTTCTGATGAAGCGGTTGTGGCAGCGA
CTAAAGCTGTCGGGGTTCATCACTTTATCAAGACTTTGCCAAAAGGATACGATACAGTGTTGGATGACACAGTCAGTCTT
TCTGTTGGGCAAAAGCAATTGCTAACTATCGCGCGTGCACTTCTTAAGGATGCTCCCTTACTTATCTTGGATGAAGCGAC
TTCATCTGTTGATACGCGGACAGAAGAATTGATCCAAAAAGCGATGGATAAGTTGATGGAGGGAAGGACTTCTTTCGTCA
TTGCTCACCGCTTGTCGACCATTCGTAATGCTGATTTGATTTTGGTCATGCGTGATGGTAATATCATTGAACAAGGAAAT
CACAATCAATTGATGGAAGAAAATGGCTTCTATGCTGATCTTTACAATAGTCAATTCGATGAAGAGGCAGAGTATGCGTA
A

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(361-508)

ABC transporter transmembrane region (ABC_membrane)

(23-298)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

71.649

99.317

0.712

Multiple sequence alignment