Detailed information NTG0518831

Bioinformatically predicted

Overview

• Name: ctsF
• Type: Machinery gene
• Locus tag: IOO20_RS08035
• Genome accession: NZ_CP066241
• Coordinates: 1540342..1541523 (-)
• Length: 393 a.a.
• NCBI ID: WP_002867247.1
• Uniprot ID: -
• Organism: Campylobacter jejuni strain RM1221
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1535342..1546523

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IOO20_RS08005	-	1535886..1536227 (+)	342	WP_002867250.1	hypothetical protein	-
IOO20_RS08010	flgM	1536290..1536487 (+)	198	WP_002867249.1	flagellar biosynthesis anti-sigma factor FlgM	-
IOO20_RS08015	-	1536530..1536964 (+)	435	WP_002779263.1	flagellar protein FlgN	-
IOO20_RS08020	flgK	1536974..1538800 (+)	1827	WP_002867248.1	flagellar hook-associated protein FlgK	-
IOO20_RS08025	-	1538817..1539581 (+)	765	WP_011049985.1	TIGR02757 family protein	-
IOO20_RS08030	-	1539585..1540349 (+)	765	WP_002855821.1	TSUP family transporter	-
IOO20_RS08035	ctsF	1540342..1541523 (-)	1182	WP_002867247.1	type II secretion system F family protein	Machinery gene
IOO20_RS08040	ctsE	1541520..1543079 (-)	1560	WP_002867246.1	GspE/PulE family protein	Machinery gene
IOO20_RS08045	ctsX	1543069..1543656 (-)	588	WP_002867245.1	hypothetical protein	Machinery gene
IOO20_RS08050	ctsP	1543660..1544268 (-)	609	WP_002851464.1	ATP-binding protein	Machinery gene
IOO20_RS08055	ctsD	1544261..1545673 (-)	1413	WP_011049986.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
IOO20_RS08060	ctsR	1545651..1545962 (-)	312	WP_002855438.1	hypothetical protein	Machinery gene

Sequence

Protein

• Length: 393 a.a.
• Molecular weight: 45750.33 Da
• Isoelectric Point: 9.0938

>NTDB_id=518831 IOO20_RS08035 WP_002867247.1 1540342..1541523(-) (ctsF) [Campylobacter jejuni strain RM1221]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVVFIVMLILAYKNFHSFAFSCDF
LFLKIPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLVFLEPMMTLFVAFLVLFLALGIFLPMWELSSGVNFN

Nucleotide

• Length: 1182 bp

>NTDB_id=518831 IOO20_RS08035 WP_002867247.1 1540342..1541523(-) (ctsF) [Campylobacter jejuni strain RM1221]
ATGAAATTTTATGAAGTGGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAAG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGCACTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTGAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTGTTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAATACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTATTTTCTATGCTCAGTGTTGCGATGAAAAGTGGAAGACTTGAAGTGTTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGTGAAAATTTAATGGATAGATTTTTGGTTTTTTTAGAGCCTATGATGACTTTATTTGTGGCGTTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTAACTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (60-179)

• Type II secretion system (T2SS), protein F (T2SSF) (261-382)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsF	Campylobacter jejuni subsp. jejuni 81-176	98.98	99.746	0.987