Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   KZ312_RS00015 Genome accession   NZ_CP080260
Coordinates   2303..3286 (-) Length   327 a.a.
NCBI ID   WP_001196487.1    Uniprot ID   -
Organism   Escherichia coli strain 135     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1..8286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZ312_RS00005 (KZ312_00005) yhjV 1..1272 (+) 1272 WP_001328774.1 aromatic amino acid transport family protein -
  KZ312_RS00010 (KZ312_00010) dppF 1302..2306 (-) 1005 WP_000107026.1 dipeptide ABC transporter ATP-binding subunit DppF -
  KZ312_RS00015 (KZ312_00015) amiE 2303..3286 (-) 984 WP_001196487.1 dipeptide ABC transporter ATP-binding protein Regulator
  KZ312_RS00020 (KZ312_00020) dppC 3297..4199 (-) 903 WP_000084667.1 dipeptide ABC transporter permease DppC -
  KZ312_RS00025 (KZ312_00025) dppB 4209..5228 (-) 1020 WP_000938853.1 dipeptide ABC transporter permease DppB -
  KZ312_RS00030 (KZ312_00030) dppA 5535..7142 (-) 1608 WP_001222875.1 dipeptide ABC transporter substrate-binding protein DppA -

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 35860.36 Da        Isoelectric Point: 6.5814

>NTDB_id=518829 KZ312_RS00015 WP_001196487.1 2303..3286(-) (amiE) [Escherichia coli strain 135]
MALLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISE
KERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKSTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQ
RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGDAHA
IFHAPRHPYTQALLRALPEFAQDKERLASLPGVVPGKYDRPNGCLLNPRCPYATDRCRAEEPALNMLSDGRQSKCHYPLD
DAGRPTL

Nucleotide


Download         Length: 984 bp        

>NTDB_id=518829 KZ312_RS00015 WP_001196487.1 2303..3286(-) (amiE) [Escherichia coli strain 135]
ATGGCGTTATTAAATGTAGATAAATTATCGGTGCATTTCGGCGACGAAAGCGCACCGTTCCGCGCCGTAGACCGCATCAG
CTACAGCGTAAAACAGGGCGAAGTGGTCGGGATTGTGGGTGAGTCCGGCTCTGGTAAATCGGTCAGTTCGCTGGCGATTA
TGGGGCTGATTGATTATCCGGGCCGCGTAATGGCGGAAAAGCTGGAGTTTAACGGTCAGGATTTACAGCGTATCTCAGAA
AAAGAGCGCCGCAACCTGGTGGGTGCCGAAGTGGCGATGATCTTCCAGGACCCGATGACCAGCCTTAACCCGTGCTACAC
CGTGGGTTTCCAGATTATGGAAGCGATTAAGGTGCATCAGGGCGGCAACAAAAGTACCCGCCGTCAGCGGGCGATTGACC
TGCTGAATCAGGTCGGTATTCCCGATCCGGCATCGCGTCTGGATGTTTACCCGCATCAGCTTTCCGGCGGCATGAGCCAG
CGCGTGATGATCGCCATGGCGATTGCCTGTCGGCCAAAGCTGCTGATTGCCGATGAACCAACCACTGCGCTGGACGTGAC
CATTCAGGCGCAAATTATCGAACTGCTGCTGGAGCTACAGCAGAAAGAGAACATGGCGCTGGTGTTGATCACTCATGACC
TGGCACTGGTGGCGGAAGCGGCACATAAAATCATCGTGATGTATGCAGGCCAGGTGGTGGAAACGGGCGATGCCCACGCC
ATCTTCCATGCGCCGCGTCATCCATATACTCAGGCATTGCTGCGTGCGCTGCCGGAATTTGCTCAGGACAAAGAACGTCT
GGCGTCGTTGCCAGGTGTTGTTCCCGGCAAGTATGACCGCCCGAACGGCTGCCTGCTTAACCCGCGCTGCCCCTATGCCA
CTGACAGATGTCGCGCTGAAGAACCGGCGCTGAATATGCTCTCTGACGGGCGTCAGTCCAAATGCCACTACCCACTTGAT
GATGCCGGGAGGCCGACACTATGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-297)

ABC transporter (ABC_tran)

(24-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

43.614

98.165

0.428
  amiE Streptococcus thermophilus LMG 18311

43.302

98.165

0.425
  amiE Streptococcus thermophilus LMD-9

43.302

98.165

0.425
  oppD Streptococcus mutans UA159

41.693

97.554

0.407