Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   IOO20_RS07515 Genome accession   NZ_CP066241
Coordinates   1434535..1435503 (+) Length   322 a.a.
NCBI ID   WP_002867310.1    Uniprot ID   A0AAW5EG90
Organism   Campylobacter jejuni strain RM1221     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1429535..1440503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IOO20_RS07490 cdsA 1430445..1431170 (-) 726 WP_002867314.1 phosphatidate cytidylyltransferase -
  IOO20_RS07495 - 1431179..1431517 (-) 339 WP_002852397.1 hypothetical protein -
  IOO20_RS07500 - 1431519..1432826 (-) 1308 WP_002914001.1 NFACT family protein -
  IOO20_RS07505 mobA 1432888..1433463 (+) 576 WP_002867312.1 molybdenum cofactor guanylyltransferase -
  IOO20_RS07510 pldA 1433460..1434449 (+) 990 WP_002867311.1 phospholipase A -
  IOO20_RS07515 ceuB 1434535..1435503 (+) 969 WP_002867310.1 ABC transporter permease Machinery gene
  IOO20_RS07520 ceuC 1435496..1436434 (+) 939 WP_002867309.1 iron chelate uptake ABC transporter family permease subunit -
  IOO20_RS07525 ceuD 1436431..1437186 (+) 756 WP_002867308.1 ABC transporter ATP-binding protein -
  IOO20_RS07530 ceuB 1437199..1438190 (+) 992 Protein_1490 enterochelin ABC transporter substrate-binding protein CeuB -
  IOO20_RS07540 - 1438416..1438970 (-) 555 WP_011049963.1 membrane protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35437.40 Da        Isoelectric Point: 9.6678

>NTDB_id=518828 IOO20_RS07515 WP_002867310.1 1434535..1435503(+) (ceuB) [Campylobacter jejuni strain RM1221]
MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQLEIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFTGASFFIQAIIASIFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDIALNLGISYNGILFLGLMIVSIITSLV
IVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALCGALFLLVCDIIARLVIFPFEMPLSITTGVLGSLIFIFLLLKRKA
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=518828 IOO20_RS07515 WP_002867310.1 1434535..1435503(+) (ceuB) [Campylobacter jejuni strain RM1221]
TTGTTTTTTAAGCATATATTGAGTTTAAAAGTGCTTATAGCTTTACTTTTATTCTTTGGAATGATAAGTTTATTTATAGG
AGTTATCAGTATCAATGTAAAAGATATCCTTAATCTTAACTCCACTCAACTAGAAATCATAACCCTTACAAGAATTCCTA
GACTTATAGCGATTTTACTCACAGGAATGAGTCTTAGTATATGCGGGCTTATCATGCAACAACTCACGCAAAATAAATTC
GTTTCTCCAACTACGGCAGGAACTATGGATTGTGCTAAATTTGGCATACTTATTTCTTTAATATTTTTTACTGGAGCATC
TTTTTTCATTCAAGCTATCATTGCTTCTATATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTTTAAGAAAAATCA
AACTCAAAGATGTGATTTTTGTACCTTTGATAGGCTTGATGTTTGGAGGCATTATTAGTGCTATAACCACTTTTTTTGCC
TATGCTTTAAATTATATACAAAATATCCAAGGCTGGCTACAAGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
ACTTTACATTTCTTTGCCACTTTTTATACTTGCTTATTTTTTAGCTCACAAAATCACCATAGTTGGCATGGGCGAAGATA
TAGCTTTAAATCTTGGAATTTCTTATAATGGGATATTATTTTTAGGCTTGATGATTGTAAGCATTATCACTAGCTTAGTG
ATTGTAAGCGTTGGAATTATCCCTTTTTTAGGGCTAATTATCCCAAATTTAGTAGCTCTTTATCTAGGTGATAATCTTAG
AAAAAATCTTATCTATATAGCACTTTGTGGAGCTTTGTTTTTACTTGTTTGCGATATCATTGCAAGACTTGTCATCTTTC
CTTTTGAAATGCCTTTAAGTATCACTACAGGTGTTTTAGGATCTTTAATCTTTATCTTTCTTTTGCTAAAAAGGAAAGCT
TATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

98.758

100

0.988