Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   IOO20_RS03845 Genome accession   NZ_CP066241
Coordinates   714909..715346 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni strain RM1221     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 709909..720346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IOO20_RS03820 kdpC 709913..710521 (+) 609 WP_002935104.1 potassium-transporting ATPase subunit KdpC -
  IOO20_RS09425 - 710652..711545 (+) 894 WP_250482767.1 hypothetical protein -
  IOO20_RS09430 - 711569..712192 (+) 624 WP_250489919.1 DUF4118 domain-containing protein -
  IOO20_RS03830 uvrB 712323..714296 (-) 1974 WP_011049758.1 excinuclease ABC subunit UvrB -
  IOO20_RS03835 - 714450..714680 (+) 231 WP_002852327.1 hypothetical protein -
  IOO20_RS03840 - 714670..714912 (+) 243 WP_002854947.1 hypothetical protein -
  IOO20_RS03845 Cj0683 714909..715346 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  IOO20_RS03850 priA 715328..717181 (+) 1854 WP_002867637.1 primosomal protein N' -
  IOO20_RS03855 cipA 717191..718587 (-) 1397 Protein_757 DUF2972 domain-containing protein -
  IOO20_RS03860 ispG 718733..719806 (+) 1074 WP_011049760.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=518817 IOO20_RS03845 WP_002852324.1 714909..715346(+) (Cj0683) [Campylobacter jejuni strain RM1221]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=518817 IOO20_RS03845 WP_002852324.1 714909..715346(+) (Cj0683) [Campylobacter jejuni strain RM1221]
ATGAACAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTGTCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAATGCTAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AATGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1