Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   JCR16_RS01600 Genome accession   NZ_CP066237
Coordinates   340073..340546 (+) Length   157 a.a.
NCBI ID   WP_001214061.1    Uniprot ID   A0A219CC01
Organism   Acinetobacter baumannii strain G20AB007     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 335073..345546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JCR16_RS01575 (JCR16_01575) - 335537..337642 (-) 2106 WP_001117590.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  JCR16_RS01580 (JCR16_01580) - 337682..337811 (-) 130 Protein_301 hypothetical protein -
  JCR16_RS01585 (JCR16_01585) rpoZ 337850..338128 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  JCR16_RS01590 (JCR16_01590) gmk 338201..338830 (-) 630 WP_000015937.1 guanylate kinase -
  JCR16_RS01595 (JCR16_01595) ispH 338953..339903 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  JCR16_RS01600 (JCR16_01600) fimU 340073..340546 (+) 474 WP_001214061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  JCR16_RS01605 (JCR16_01605) pilV 340540..341100 (+) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  JCR16_RS01610 (JCR16_01610) pilW 341101..342102 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  JCR16_RS01615 (JCR16_01615) pilX 342099..342917 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16836.40 Da        Isoelectric Point: 8.5355

>NTDB_id=518768 JCR16_RS01600 WP_001214061.1 340073..340546(+) (fimU) [Acinetobacter baumannii strain G20AB007]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILSKLGTLVFKAEENC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=518768 JCR16_RS01600 WP_001214061.1 340073..340546(+) (fimU) [Acinetobacter baumannii strain G20AB007]
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACTACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGTCCAAGCTTGGCACTTTGGTTTTTAAGGCCGAGGAGAATTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-147)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A219CC01

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

98.726

100

0.987