Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   I5435_RS21090 Genome accession   NZ_CP066226
Coordinates   4291395..4292345 (-) Length   316 a.a.
NCBI ID   WP_024361370.1    Uniprot ID   A0A2S0JVN5
Organism   Lysinibacillus sp. C5.1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4286395..4297345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5435_RS21065 - 4287508..4288152 (+) 645 WP_337982922.1 hypothetical protein -
  I5435_RS21070 - 4288308..4288622 (-) 315 WP_024361366.1 antibiotic biosynthesis monooxygenase -
  I5435_RS21075 - 4288624..4289631 (-) 1008 WP_024361367.1 siderophore ABC transporter substrate-binding protein -
  I5435_RS21080 - 4289691..4290452 (-) 762 WP_024361368.1 ABC transporter ATP-binding protein -
  I5435_RS21085 - 4290449..4291402 (-) 954 WP_024361369.1 iron chelate uptake ABC transporter family permease subunit -
  I5435_RS21090 ceuB 4291395..4292345 (-) 951 WP_024361370.1 ABC transporter permease Machinery gene
  I5435_RS21095 - 4292475..4292606 (-) 132 WP_337982923.1 hypothetical protein -
  I5435_RS21100 - 4292634..4293689 (-) 1056 WP_024361371.1 membrane protein -
  I5435_RS21105 menC 4293754..4294863 (-) 1110 WP_337982924.1 o-succinylbenzoate synthase -
  I5435_RS21110 - 4294886..4295710 (-) 825 WP_337982925.1 GNAT family N-acetyltransferase -
  I5435_RS21115 - 4295726..4296853 (-) 1128 WP_024361374.1 M20 peptidase aminoacylase family protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34739.00 Da        Isoelectric Point: 10.1796

>NTDB_id=518614 I5435_RS21090 WP_024361370.1 4291395..4292345(-) (ceuB) [Lysinibacillus sp. C5.1]
MKIRYLLTATVVLSIVSLFIGVVNIKPSDLLDFGSEETRLFIISRVPRLVAILLAGAGMSIAGLIMQSLSRNKFVSPTTA
GTLDATKLGVLISMMFFTNVTYFQKISFAFIFALAGTLLFMQILNRIKFKDAIFIPLIGLMFGNILSSITTFFAYKADII
QNITAWLQGDFSLIMKGRYELLYISVPVLILAYIYANRFTVAGMGEDFAKNLGLSYKFVVNLGLVLVALVTTTVVLTVGM
IPFLGLIIPNIISLFKGDNLAKTLPHTALLGMSFLLLCDILGRVLIFPYEIPISMTVGVIGSAIFLFMLFRGRAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=518614 I5435_RS21090 WP_024361370.1 4291395..4292345(-) (ceuB) [Lysinibacillus sp. C5.1]
ATGAAAATAAGATATCTTTTAACAGCAACTGTTGTGTTGTCTATTGTGTCGCTATTCATTGGTGTAGTAAATATTAAACC
AAGTGACTTATTAGACTTCGGTTCAGAAGAAACTAGACTATTTATTATTAGTCGTGTACCAAGACTTGTAGCAATTTTGC
TAGCAGGTGCAGGTATGAGTATTGCTGGTTTAATTATGCAAAGCTTAAGTAGGAATAAGTTCGTGTCACCAACTACAGCA
GGAACTTTAGATGCTACGAAATTAGGTGTCCTAATTTCAATGATGTTTTTTACAAATGTCACGTACTTCCAAAAAATTTC
CTTCGCTTTCATATTTGCTTTAGCCGGCACATTATTGTTTATGCAAATATTAAATCGAATAAAGTTTAAAGATGCGATTT
TTATACCGCTTATTGGCTTAATGTTCGGAAATATTCTTTCGTCGATTACGACATTCTTTGCGTATAAGGCAGATATAATT
CAAAACATTACTGCATGGTTACAAGGAGATTTCTCTTTAATAATGAAAGGTCGTTATGAGCTTTTATACATAAGTGTACC
TGTTCTAATTTTAGCTTACATTTATGCGAATCGTTTCACAGTGGCTGGAATGGGTGAAGATTTTGCAAAAAATCTTGGTC
TTTCCTATAAATTCGTTGTGAATTTAGGTCTAGTGTTAGTAGCACTCGTAACAACTACGGTGGTATTAACTGTTGGTATG
ATTCCTTTCCTTGGATTAATTATTCCAAATATCATATCGCTATTCAAAGGGGATAACCTTGCAAAGACATTACCACATAC
AGCATTACTCGGAATGTCATTCCTATTATTATGTGATATTTTAGGACGCGTCTTGATTTTCCCTTACGAAATTCCGATTA
GTATGACGGTCGGCGTCATCGGAAGTGCCATCTTCCTATTTATGTTGTTTAGGGGGAGAGCATATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S0JVN5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.165

100

0.532