Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   I5435_RS14045 Genome accession   NZ_CP066226
Coordinates   2885043..2886734 (-) Length   563 a.a.
NCBI ID   WP_337982463.1    Uniprot ID   -
Organism   Lysinibacillus sp. C5.1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2880043..2891734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5435_RS14025 - 2880420..2881313 (-) 894 WP_258842107.1 sugar ABC transporter permease -
  I5435_RS14030 - 2881355..2882479 (-) 1125 WP_337982462.1 ABC transporter ATP-binding protein -
  I5435_RS14035 spo0A 2882821..2883612 (-) 792 WP_024361169.1 sporulation transcription factor Spo0A -
  I5435_RS14040 - 2883968..2884915 (-) 948 WP_024361170.1 SpoIVB peptidase S55 domain-containing protein -
  I5435_RS14045 recN 2885043..2886734 (-) 1692 WP_337982463.1 DNA repair protein RecN Machinery gene
  I5435_RS14050 argR 2886853..2887302 (-) 450 WP_024361172.1 transcriptional regulator ArgR -
  I5435_RS14055 - 2887404..2888222 (-) 819 WP_108029719.1 TlyA family RNA methyltransferase -
  I5435_RS14060 dxs 2888222..2890123 (-) 1902 WP_024361174.1 1-deoxy-D-xylulose-5-phosphate synthase -
  I5435_RS14065 - 2890287..2891168 (-) 882 WP_024361175.1 polyprenyl synthetase family protein -
  I5435_RS14070 xseB 2891174..2891407 (-) 234 WP_024361176.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63323.16 Da        Isoelectric Point: 4.6924

>NTDB_id=518604 I5435_RS14045 WP_337982463.1 2885043..2886734(-) (recN) [Lysinibacillus sp. C5.1]
MLRELSIRNFAIIEDLTVSFSDGLTVLTGETGAGKSIIIDAVHLLAGGRGNSEFIRHGAKKAELGGLFQISSTAHPVYKK
LEEAGIEIEEDSIILRRDLNDSGKSVCRVNGKLVPLSVLRDIGASLIDIHGQHENQELMDEKQHIHLLDQFAEEQLSPIL
EQYSIQYNEYRALKKELATISIDEQLMAQRIDLYQFQMKELEDANLKLGEEDELLDERRRLMNFNKIFERSSAAYEAIQG
ETKGLDWIGTAMGALDDAAVIDEQFKEASESVTTAFYALQDAAYQVKNVLDELEFDPARLNEVEQRLALFQNLKRKYGST
VEEMLAYYEKIKTELSELLNRDEILQLKERKVLEMEVVLSEFAVKLSHVRKAAANDLSEAIMAELRELHMEKAKFIVNFD
ALPYFDVNGKDQVIFYISTNVGEPPKSLPKIASGGELSRMMLALKTIFSSSNGVTSIIFDEVDTGVSGRVAQAIAEKIAA
ISVNSQVLCISHLPQVAAMADHHYFIKKEVEHDRTFTSLAEIDTDARIEEVSRMMSGAEITDLTLQHATELLKMANERKK
QMR

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=518604 I5435_RS14045 WP_337982463.1 2885043..2886734(-) (recN) [Lysinibacillus sp. C5.1]
GTGTTAAGAGAGCTTAGTATTCGAAATTTTGCCATCATCGAGGATTTAACGGTTAGTTTTTCGGATGGTTTAACTGTACT
AACAGGAGAAACTGGTGCTGGGAAATCCATTATTATTGATGCGGTACATTTACTTGCTGGTGGTAGAGGCAATTCAGAAT
TTATTCGTCATGGTGCTAAAAAAGCAGAGTTAGGCGGGTTGTTTCAAATTTCAAGCACTGCACATCCTGTATATAAGAAA
TTGGAGGAAGCAGGCATTGAAATAGAAGAAGATTCTATTATTTTACGCCGCGATTTAAATGACTCTGGTAAAAGTGTTTG
TCGGGTAAATGGCAAATTGGTCCCTTTATCGGTTTTACGAGATATTGGTGCAAGTTTAATTGATATACATGGTCAACATG
AAAATCAAGAACTAATGGATGAAAAACAACATATTCATTTATTGGATCAATTTGCAGAAGAGCAACTATCACCGATTCTT
GAACAATACAGTATTCAATATAACGAATATCGGGCATTAAAAAAAGAATTAGCCACCATTTCTATTGATGAGCAGTTAAT
GGCGCAACGCATTGATTTGTACCAATTCCAAATGAAAGAATTGGAAGATGCAAATTTAAAGCTTGGTGAAGAAGATGAGC
TGTTAGATGAACGTCGTCGTCTAATGAATTTTAATAAAATTTTCGAACGTTCGAGTGCTGCCTATGAAGCAATTCAGGGA
GAGACAAAAGGGCTTGACTGGATCGGTACAGCGATGGGCGCATTAGATGATGCGGCGGTCATCGATGAACAGTTTAAAGA
GGCATCTGAGTCGGTAACAACTGCTTTTTACGCTTTACAGGATGCTGCCTATCAGGTAAAAAATGTATTAGATGAGTTAG
AATTCGATCCTGCGCGATTAAATGAAGTGGAGCAACGCTTGGCACTTTTCCAAAACTTAAAGCGCAAATACGGCTCCACT
GTTGAAGAAATGCTCGCCTATTATGAGAAGATTAAAACAGAGCTTAGTGAGCTTTTGAATCGTGATGAAATATTACAATT
AAAAGAACGAAAAGTACTTGAAATGGAAGTAGTATTAAGTGAATTTGCTGTAAAACTTTCGCATGTTCGAAAAGCAGCAG
CCAATGATTTAAGCGAGGCTATTATGGCAGAGCTACGTGAATTACATATGGAAAAAGCAAAATTTATTGTAAATTTTGAT
GCTTTACCTTACTTTGATGTCAATGGTAAAGACCAAGTGATCTTTTATATTTCAACGAATGTCGGGGAACCACCGAAATC
TTTACCGAAAATTGCTTCTGGTGGGGAATTGTCGCGTATGATGTTAGCATTAAAAACGATTTTTTCTTCTTCCAATGGTG
TAACATCCATTATTTTTGACGAAGTGGATACTGGCGTAAGCGGTCGCGTAGCGCAAGCAATCGCTGAAAAAATTGCAGCT
ATTTCTGTTAATTCTCAAGTTTTGTGTATTTCGCATTTACCTCAAGTGGCGGCGATGGCTGACCATCATTACTTCATTAA
AAAAGAGGTTGAACATGATCGGACATTTACTTCTTTAGCAGAAATCGATACAGATGCTCGTATTGAAGAAGTGAGCAGAA
TGATGTCAGGTGCAGAAATTACCGATTTAACTTTACAGCATGCGACAGAATTGTTAAAGATGGCAAACGAACGAAAAAAA
CAAATGCGCTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

53.022

100

0.545