Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   SCIM_RS02390 Genome accession   NC_018073
Coordinates   480285..480998 (-) Length   237 a.a.
NCBI ID   WP_014829589.1    Uniprot ID   A0AAE8G0A0
Organism   Streptococcus intermedius JTH08     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 475285..485998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCIM_RS02375 (SCIM_0417) - 475808..476932 (+) 1125 WP_003078247.1 AI-2E family transporter -
  SCIM_RS02380 (SCIM_0418) - 477155..478801 (+) 1647 WP_003078381.1 phosphoenolpyruvate carboxykinase (ATP) -
  SCIM_RS02385 (SCIM_0419) - 478890..480230 (+) 1341 WP_003078229.1 hemolysin family protein -
  SCIM_RS02390 (SCIM_0420) treR 480285..480998 (-) 714 WP_014829589.1 trehalose operon repressor Regulator
  SCIM_RS02395 (SCIM_0421) treP 481177..483189 (+) 2013 WP_003078317.1 PTS system trehalose-specific EIIBC component -
  SCIM_RS02400 (SCIM_0422) treC 483357..485000 (+) 1644 WP_003078290.1 alpha,alpha-phosphotrehalase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27753.84 Da        Isoelectric Point: 8.9546

>NTDB_id=51860 SCIM_RS02390 WP_014829589.1 480285..480998(-) (treR) [Streptococcus intermedius JTH08]
MKKYEQIFKLLKQDILNETYQIDDYLPSEHELVQTYKVSRDTIRKSLDLLQKAELIQKIRGQGSKVIKQAQIDFPVSNLT
SYQELVQQHGINSKTNLIQLEKITVDKKLSNLTGFPEYRLVWRIVRQRVVDDVASVLDIDYLDKTLVPSLTREIAEQSIY
AYLEEELGLRIAYAQKEITIDPATNRDQILMDIGTDQHVVSVKSKVYLADGQQFQFTDSRHKLEKFRFIDFAKRQKR

Nucleotide


Download         Length: 714 bp        

>NTDB_id=51860 SCIM_RS02390 WP_014829589.1 480285..480998(-) (treR) [Streptococcus intermedius JTH08]
ATGAAAAAATATGAACAAATTTTCAAACTCCTAAAACAGGATATTCTAAATGAAACATATCAGATCGATGATTATCTCCC
TAGTGAACACGAACTCGTACAAACTTACAAAGTCAGTCGTGACACCATTCGTAAGTCACTTGATTTACTTCAAAAAGCAG
AGCTCATCCAAAAAATAAGAGGACAAGGTTCTAAAGTCATCAAACAAGCACAGATTGATTTTCCTGTCTCCAACCTGACT
AGCTACCAAGAACTCGTGCAGCAGCATGGAATAAATTCTAAAACTAATCTCATCCAATTAGAGAAAATTACAGTTGATAA
AAAATTATCTAATCTCACTGGTTTTCCTGAATATCGTCTGGTATGGCGAATTGTCCGCCAAAGAGTAGTCGATGATGTCG
CTTCTGTTTTAGATATTGATTATCTTGATAAAACTCTTGTCCCTTCCTTAACTAGAGAAATAGCAGAACAATCGATTTAT
GCTTATTTAGAAGAAGAATTAGGACTGCGCATTGCCTATGCCCAAAAAGAAATTACGATTGATCCAGCTACAAACCGTGA
CCAAATCTTGATGGATATCGGAACTGACCAGCATGTCGTTTCTGTCAAATCCAAAGTTTACCTTGCAGATGGACAACAAT
TTCAATTTACAGATAGTCGCCATAAACTCGAAAAGTTCCGTTTTATTGACTTTGCTAAGCGACAAAAACGCTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(90-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

63.559

99.578

0.633

Multiple sequence alignment