Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JEM45_RS08705 Genome accession   NZ_CP066224
Coordinates   1682191..1683570 (+) Length   459 a.a.
NCBI ID   WP_026866163.1    Uniprot ID   A0A7T5BTD5
Organism   Jeotgalicoccus sp. ATCC 8456     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1677191..1688570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JEM45_RS08685 (JEM45_08685) - 1677519..1677986 (+) 468 WP_026866167.1 CtsR family transcriptional regulator -
  JEM45_RS08690 (JEM45_08690) - 1677991..1678506 (+) 516 WP_026866166.1 UvrB/UvrC motif-containing protein -
  JEM45_RS08695 (JEM45_08695) - 1678496..1679512 (+) 1017 WP_198687305.1 protein arginine kinase -
  JEM45_RS08700 (JEM45_08700) - 1679513..1681957 (+) 2445 WP_198687306.1 ATP-dependent Clp protease ATP-binding subunit -
  JEM45_RS08705 (JEM45_08705) radA 1682191..1683570 (+) 1380 WP_026866163.1 DNA repair protein RadA Machinery gene
  JEM45_RS08710 (JEM45_08710) - 1683603..1684655 (+) 1053 WP_026866162.1 PIN/TRAM domain-containing protein -
  JEM45_RS08715 (JEM45_08715) ispD 1684652..1685326 (+) 675 WP_026866161.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  JEM45_RS08720 (JEM45_08720) ispF 1685328..1685813 (+) 486 WP_026866160.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  JEM45_RS08725 (JEM45_08725) gltX 1685813..1687264 (+) 1452 WP_026866159.1 glutamate--tRNA ligase -
  JEM45_RS08730 (JEM45_08730) cysE 1687513..1688169 (+) 657 WP_026866158.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 50360.97 Da        Isoelectric Point: 7.7614

>NTDB_id=518583 JEM45_RS08705 WP_026866163.1 1682191..1683570(+) (radA) [Jeotgalicoccus sp. ATCC 8456]
MAKPKVTFECMACGYETPKWMGKCPNCGAWNQLEEKIVHKETVSGRGTLGKNKIDERSKASKLSTIEKKVTPRTTTRSGE
FDRVLGGGIVNGSLILIGGDPGIGKSTILLQTALILAENHNVLYVSGEESLEQIKMRADRITSKPSNLTVFCETNLLYIH
DEIKKIQPDYLIIDSIQTVFHPDVTSAPGSVAQVRESTQSIMNIAKGNNIATFIVGHVTKDGQIAGPRLLEHMVDTVLYF
EGDQHHTYRILRAVKNRFGSTNEMGIFEMKASGLEEVLNPSEIFLEERSKNAPGSAIVATMEGTRAMLVEVQSLVTPTHF
HNPRRMATGIDTNRLSLLMAVLEKSEGLLMQQHDAYIKVAGGVKLDEPAVDLSIVISIASSFQNIAVRGDDCFIGEVGLT
GEIRRVTKIEQRLQEAAKLGFKRAIVPQSNLSGVQVPDGLEVLGVKTLKQALRHTKFND

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=518583 JEM45_RS08705 WP_026866163.1 1682191..1683570(+) (radA) [Jeotgalicoccus sp. ATCC 8456]
ATGGCAAAACCAAAAGTTACTTTTGAGTGTATGGCATGTGGTTATGAAACACCTAAATGGATGGGTAAATGTCCAAATTG
CGGTGCGTGGAATCAGCTTGAAGAAAAAATTGTACATAAAGAAACCGTTAGTGGTCGAGGGACGCTCGGAAAAAATAAGA
TAGATGAGCGTAGTAAAGCATCTAAATTAAGTACCATTGAAAAGAAAGTCACACCAAGAACAACTACGCGTTCTGGGGAA
TTCGATAGAGTGCTCGGTGGTGGTATTGTTAATGGATCGCTTATTTTAATTGGTGGTGACCCAGGTATAGGGAAGTCCAC
TATTCTCTTACAGACTGCATTAATTCTAGCTGAAAACCATAACGTTTTATACGTATCTGGGGAGGAATCTCTAGAGCAGA
TTAAAATGCGTGCAGACCGCATTACCTCAAAACCATCCAATTTAACAGTCTTTTGTGAGACAAACCTTTTGTATATTCAT
GATGAAATTAAAAAGATCCAACCAGATTATTTGATTATCGACTCAATTCAGACTGTCTTTCACCCAGACGTTACAAGCGC
ACCAGGTTCAGTGGCACAAGTGAGAGAGAGTACACAGTCTATTATGAATATCGCTAAGGGCAATAATATTGCAACCTTTA
TAGTTGGACATGTCACAAAGGATGGACAGATTGCAGGTCCTAGATTGCTTGAACATATGGTTGATACTGTACTCTATTTT
GAAGGGGATCAGCATCATACTTATCGTATCTTAAGAGCAGTGAAAAACAGGTTTGGTTCAACAAATGAGATGGGTATTTT
TGAGATGAAAGCGAGTGGTTTAGAAGAGGTGTTAAACCCTTCTGAAATCTTCTTGGAAGAACGTTCGAAAAATGCGCCAG
GATCAGCTATTGTTGCCACTATGGAGGGTACGAGAGCGATGCTAGTAGAAGTACAATCCCTTGTTACGCCTACCCACTTT
CACAATCCAAGACGCATGGCAACCGGTATCGATACTAACCGTCTATCGCTACTTATGGCAGTGTTAGAAAAATCGGAAGG
TCTGCTGATGCAGCAACATGATGCTTATATTAAAGTAGCAGGTGGTGTGAAATTAGACGAACCTGCAGTAGACTTAAGTA
TAGTCATCAGTATTGCATCAAGTTTTCAAAACATTGCTGTACGAGGAGATGATTGTTTCATTGGTGAAGTTGGCTTAACT
GGGGAAATCAGACGTGTGACAAAGATCGAACAGAGGCTACAAGAAGCGGCAAAACTTGGCTTCAAAAGAGCTATTGTTCC
TCAGTCCAATTTAAGTGGGGTCCAAGTACCTGATGGTTTAGAAGTGTTGGGTGTTAAGACTTTAAAACAAGCATTGAGAC
ATACAAAATTTAATGATTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(84-223)

Subunit ChlI of Mg-chelatase (ChlI)

(353-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T5BTD5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

63.216

98.911

0.625
  radA Streptococcus pneumoniae Rx1

57.837

98.693

0.571
  radA Streptococcus pneumoniae D39

57.837

98.693

0.571
  radA Streptococcus pneumoniae R6

57.837

98.693

0.571
  radA Streptococcus pneumoniae TIGR4

57.837

98.693

0.571
  radA Streptococcus mitis NCTC 12261

57.837

98.693

0.571
  radA Streptococcus mitis SK321

57.837

98.693

0.571