Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   JD965_RS13600 Genome accession   NZ_CP066219
Coordinates   2664016..2664768 (-) Length   250 a.a.
NCBI ID   WP_198697960.1    Uniprot ID   -
Organism   Bacillus siamensis strain B28     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2659016..2669768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JD965_RS13570 (JD965_13570) - 2659365..2659799 (+) 435 WP_058906252.1 helix-turn-helix domain-containing protein -
  JD965_RS13575 (JD965_13575) - 2659813..2660259 (+) 447 WP_058906253.1 ImmA/IrrE family metallo-endopeptidase -
  JD965_RS13580 (JD965_13580) - 2660299..2661723 (+) 1425 WP_198697957.1 recombinase family protein -
  JD965_RS13585 (JD965_13585) radC 2661736..2662143 (-) 408 Protein_2658 RadC family protein -
  JD965_RS13590 (JD965_13590) - 2662175..2662744 (-) 570 WP_016938779.1 Maf family protein -
  JD965_RS13595 (JD965_13595) - 2662888..2663889 (-) 1002 WP_198697959.1 SPOR domain-containing protein -
  JD965_RS13600 (JD965_13600) comC 2664016..2664768 (-) 753 WP_198697960.1 prepilin peptidase Machinery gene
  JD965_RS13605 (JD965_13605) - 2664908..2666200 (-) 1293 WP_198697961.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  JD965_RS13610 (JD965_13610) - 2666259..2668901 (-) 2643 WP_099744716.1 valine--tRNA ligase -
  JD965_RS13615 (JD965_13615) - 2669353..2669544 (+) 192 WP_016938774.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 26857.41 Da        Isoelectric Point: 8.8953

>NTDB_id=518523 JD965_RS13600 WP_198697960.1 2664016..2664768(-) (comC) [Bacillus siamensis strain B28]
MLFILFVLGLIFGSFFYTVACRIPLRISVISPRSSCSFCGLPLSWGELVPVVSYILQRGRCRHCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLIALLFLSLLMIVTVTDLQYMLIPDKVLLFFLPLFIAGRIFSPLDSWYAGFAGAVCGFALLVFI
MFVSKGGIGAGDVKLFGVIGLALGVKLVLIAFFLSVIIGSVYGMCAAAGGRLGKKQPFPFAPAIAAGSAVSYLYGEELFA
FYITLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=518523 JD965_RS13600 WP_198697960.1 2664016..2664768(-) (comC) [Bacillus siamensis strain B28]
ATGCTTTTCATTCTGTTTGTTCTCGGTCTGATTTTCGGTTCTTTTTTTTATACAGTCGCATGCCGTATTCCGCTTCGAAT
CTCGGTTATTTCGCCGCGTTCATCCTGTTCGTTCTGCGGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTTGTTTCCT
ATATCCTGCAAAGAGGAAGGTGCAGACACTGCCGTGCGAAGCTGTCAGTGATGTATCCGGCAGCGGAATGCTGGACGGCA
TGTTTATTCACGGCTGCCGGTATCCATTTCGGTTTCTCAAAAGAGCTGCTAATCGCGCTGTTATTTTTGTCTCTGCTGAT
GATTGTTACTGTGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTTATCGCCG
GCCGTATTTTTTCTCCGCTGGATTCATGGTATGCGGGGTTTGCCGGAGCTGTTTGCGGATTTGCTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAGCTGTTTGGAGTGATCGGACTTGCGCTCGGCGTGAAGCT
CGTCCTTATTGCATTCTTTCTTTCCGTTATAATCGGGTCCGTATACGGTATGTGCGCCGCAGCGGGAGGCAGGCTTGGTA
AAAAGCAGCCTTTCCCGTTTGCGCCGGCCATCGCAGCCGGGAGCGCCGTGAGTTACTTATACGGTGAAGAGCTGTTCGCG
TTTTACATCACACTCGCTTCAGGCGGAGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

57.661

99.2

0.572