Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   SCIM_RS01715 Genome accession   NC_018073
Coordinates   342066..342797 (+) Length   243 a.a.
NCBI ID   WP_003073841.1    Uniprot ID   -
Organism   Streptococcus intermedius JTH08     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 337066..347797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCIM_RS01685 (SCIM_0292) - 337405..338844 (+) 1440 WP_003078266.1 NCS2 family permease -
  SCIM_RS01690 (SCIM_0293) tsaE 339182..339622 (+) 441 WP_003078375.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  SCIM_RS01695 (SCIM_0294) - 339615..340136 (+) 522 WP_003073848.1 GNAT family N-acetyltransferase -
  SCIM_RS01700 (SCIM_0295) brpA 340144..341247 (+) 1104 WP_003078359.1 biofilm formation/cell division transcriptional regulator BrpA -
  SCIM_RS01705 (SCIM_0296) - 341290..341577 (-) 288 WP_003078430.1 hypothetical protein -
  SCIM_RS01710 (SCIM_0297) - 341587..341997 (-) 411 WP_003073842.1 HIT family protein -
  SCIM_RS01715 (SCIM_0298) pptA 342066..342797 (+) 732 WP_003073841.1 ABC transporter ATP-binding protein Regulator
  SCIM_RS01720 (SCIM_0299) - 342794..343840 (+) 1047 WP_003078361.1 ABC transporter permease -
  SCIM_RS01725 ccrZ 343891..344688 (+) 798 WP_003073837.1 cell cycle regulator CcrZ -
  SCIM_RS01730 (SCIM_0300) trmB 344685..345320 (+) 636 WP_003078354.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  SCIM_RS01735 (SCIM_0301) - 345721..346413 (+) 693 WP_003073834.1 VIT family protein -
  SCIM_RS01740 (SCIM_0302) rimP 346625..347113 (+) 489 WP_003078411.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27036.50 Da        Isoelectric Point: 4.5977

>NTDB_id=51851 SCIM_RS01715 WP_003073841.1 342066..342797(+) (pptA) [Streptococcus intermedius JTH08]
MLEIKGLTGGYINIPVLKDISFTVENGELVGLIGLNGAGKSTTINEIIGLLTPYKGEILIDGAKLQDNPMGYRKKIGFIP
ETPSLYEELTLREHIETVAMAYDVDQEVAFARVEQLLTKFRLKEKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPVAIADLIELLKDEKTKGKSILMSTHVLDSAERMCDSFVILHKGEIRAKGNLSELQSEFSMPEASLNEIYLALTEE
ASL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=51851 SCIM_RS01715 WP_003073841.1 342066..342797(+) (pptA) [Streptococcus intermedius JTH08]
ATGTTAGAAATAAAAGGGCTTACAGGCGGATATATAAATATCCCTGTTTTAAAAGATATCAGTTTCACGGTAGAAAATGG
TGAGCTGGTGGGCTTAATTGGTTTGAATGGTGCTGGAAAGTCTACAACAATCAATGAAATTATTGGACTTTTAACTCCTT
ATAAAGGGGAAATTTTAATTGACGGCGCTAAACTGCAAGATAATCCCATGGGTTATCGTAAGAAAATTGGATTTATTCCA
GAGACCCCTAGTTTATATGAGGAATTGACTTTAAGAGAGCACATTGAAACAGTTGCTATGGCTTATGATGTCGATCAAGA
GGTAGCTTTTGCGCGCGTGGAACAATTATTGACCAAGTTTCGCTTGAAAGAAAAATTGGATTGGTTCCCCGTTCACTTTT
CAAAGGGAATGAAGCAAAAAGTCATGATTATTTGCGCCTTTGTAGTTGATCCGAGTCTCTTTATCGTAGATGAGCCATTT
TTGGGACTCGATCCAGTAGCGATTGCTGATTTGATAGAGCTTTTGAAAGATGAAAAGACGAAAGGCAAATCTATCCTGAT
GAGTACGCATGTGTTGGACTCAGCAGAAAGAATGTGTGATTCATTCGTGATTTTGCACAAGGGGGAAATCCGAGCGAAAG
GTAACTTATCAGAGTTGCAATCAGAATTTTCTATGCCAGAAGCTAGCCTGAATGAGATCTATCTGGCATTGACAGAAGAG
GCAAGTCTATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus thermophilus LMD-9

71.13

98.354

0.7
  pptA Streptococcus salivarius strain HSISS4

70.711

98.354

0.695

Multiple sequence alignment