Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   JD965_RS10980 Genome accession   NZ_CP066219
Coordinates   2185555..2186163 (+) Length   202 a.a.
NCBI ID   WP_047475764.1    Uniprot ID   -
Organism   Bacillus siamensis strain B28     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2180555..2191163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JD965_RS10940 (JD965_10940) - 2181588..2182094 (-) 507 WP_016939058.1 PTS sugar transporter subunit IIA -
  JD965_RS10945 (JD965_10945) - 2182232..2182645 (+) 414 WP_047475747.1 Hsp20/alpha crystallin family protein -
  JD965_RS10950 (JD965_10950) - 2182675..2183145 (-) 471 WP_047475746.1 YppG family protein -
  JD965_RS10955 (JD965_10955) - 2183333..2183515 (+) 183 WP_047475745.1 YppF family protein -
  JD965_RS10960 (JD965_10960) - 2183553..2183921 (-) 369 WP_047475744.1 YppE family protein -
  JD965_RS10965 (JD965_10965) - 2183967..2184203 (-) 237 WP_047475743.1 DUF5446 family protein -
  JD965_RS10970 (JD965_10970) sspM 2184408..2184512 (+) 105 WP_016939063.1 acid-soluble spore protein SspM -
  JD965_RS10975 (JD965_10975) - 2184551..2185513 (-) 963 WP_047475742.1 DUF2515 domain-containing protein -
  JD965_RS10980 (JD965_10980) recU 2185555..2186163 (+) 609 WP_047475764.1 Holliday junction resolvase RecU Machinery gene
  JD965_RS10985 (JD965_10985) - 2186202..2188982 (+) 2781 WP_198697805.1 PBP1A family penicillin-binding protein -
  JD965_RS10990 (JD965_10990) - 2189061..2189552 (-) 492 WP_198697806.1 YpoC family protein -
  JD965_RS10995 (JD965_10995) nth 2189549..2190208 (-) 660 WP_016939068.1 endonuclease III -
  JD965_RS11000 (JD965_11000) dnaD 2190227..2190925 (-) 699 WP_016939069.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23738.82 Da        Isoelectric Point: 9.4375

>NTDB_id=518505 JD965_RS10980 WP_047475764.1 2185555..2186163(+) (recU) [Bacillus siamensis strain B28]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFEKVYFLEADKLFVFWERKE
NNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=518505 JD965_RS10980 WP_047475764.1 2185555..2186163(+) (recU) [Bacillus siamensis strain B28]
GTGATTCGGTATCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCCCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCGGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCATTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAGCAGTCTTCGACCACCGATTACAATGGGATTTATAAAGGGCGCTACATTGATTTCGAAGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGACCATCAAATTGAGCACATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGAAAAGGTTTATTTCCTCGAGGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AACAACGGCAGAAAGTCGATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAGCAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.452

98.515

0.891