Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   JD965_RS09205 Genome accession   NZ_CP066219
Coordinates   1817483..1817854 (+) Length   123 a.a.
NCBI ID   WP_231595085.1    Uniprot ID   -
Organism   Bacillus siamensis strain B28     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1812483..1822854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JD965_RS09200 (JD965_09200) - 1815912..1817123 (-) 1212 WP_198698880.1 cytochrome P450 family protein -
  JD965_RS09205 (JD965_09205) nucA/comI 1817483..1817854 (+) 372 WP_231595085.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  JD965_RS09210 (JD965_09210) - 1817915..1818670 (+) 756 WP_047474880.1 YoaK family protein -
  JD965_RS09215 (JD965_09215) - 1818705..1819067 (-) 363 WP_016936035.1 hypothetical protein -
  JD965_RS09220 (JD965_09220) - 1819250..1820578 (-) 1329 WP_198698881.1 S8 family peptidase -
  JD965_RS09225 (JD965_09225) - 1820743..1820976 (+) 234 WP_198698882.1 hypothetical protein -
  JD965_RS09230 (JD965_09230) - 1821231..1821938 (+) 708 WP_045926688.1 poly-gamma-glutamate hydrolase family protein -
  JD965_RS09235 (JD965_09235) - 1821999..1822451 (+) 453 WP_016936030.1 OsmC family protein -
  JD965_RS09240 (JD965_09240) - 1822465..1822818 (-) 354 WP_045926686.1 DMT family transporter -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 13371.89 Da        Isoelectric Point: 6.4585

>NTDB_id=518504 JD965_RS09205 WP_231595085.1 1817483..1817854(+) (nucA/comI) [Bacillus siamensis strain B28]
MSAGTLSENTARAASRYDQVLYFPLLKYPETGNHIKDAISAGHSDICTIDRGGAEDRRKESLKGIPTKPGFDRDEWPMAV
CTEGGAGADIRYVTPSDNRGAGSWVGNQMSRYSDGTKVLFIVQ

Nucleotide


Download         Length: 372 bp        

>NTDB_id=518504 JD965_RS09205 WP_231595085.1 1817483..1817854(+) (nucA/comI) [Bacillus siamensis strain B28]
ATGAGCGCCGGCACTCTTTCGGAGAATACTGCCCGAGCCGCGTCCAGATACGATCAGGTGCTTTATTTCCCGCTGTTAAA
ATATCCGGAGACGGGAAATCATATAAAAGACGCCATTTCGGCAGGGCACTCTGACATTTGTACAATTGATCGCGGCGGAG
CTGAGGATAGAAGGAAAGAATCATTGAAAGGAATTCCGACAAAGCCCGGATTTGACCGTGATGAATGGCCGATGGCGGTC
TGTACAGAAGGCGGGGCTGGAGCTGATATCAGATATGTAACCCCTTCGGACAATCGCGGGGCCGGCTCATGGGTCGGAAA
TCAAATGAGCAGGTATTCCGACGGCACGAAAGTATTATTTATCGTTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

62.963

87.805

0.553