Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   JD965_RS07815 Genome accession   NZ_CP066219
Coordinates   1473648..1473932 (+) Length   94 a.a.
NCBI ID   WP_013352109.1    Uniprot ID   A0AAP7NBF5
Organism   Bacillus siamensis strain B28     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1468648..1478932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JD965_RS07795 (JD965_07795) - 1469893..1470801 (+) 909 WP_198698808.1 ketopantoate reductase family protein -
  JD965_RS07800 (JD965_07800) - 1470831..1472063 (-) 1233 WP_198698809.1 aminopeptidase -
  JD965_RS07805 (JD965_07805) - 1472164..1472298 (-) 135 WP_016936273.1 protein YkpC -
  JD965_RS07810 (JD965_07810) mreBH 1472370..1473377 (-) 1008 WP_029575211.1 cell shape-determining protein MreBH -
  JD965_RS07815 (JD965_07815) abrB 1473648..1473932 (+) 285 WP_013352109.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  JD965_RS07820 (JD965_07820) - 1474104..1475408 (+) 1305 WP_198698810.1 ATP-binding protein -
  JD965_RS07825 (JD965_07825) - 1475410..1476237 (+) 828 WP_016936270.1 gamma-glutamylcyclotransferase -
  JD965_RS07830 (JD965_07830) ktrC 1476278..1476943 (+) 666 WP_198698811.1 Ktr system potassium transporter KtrC -
  JD965_RS07835 (JD965_07835) ade 1477093..1478826 (+) 1734 WP_198698812.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10542.41 Da        Isoelectric Point: 5.2168

>NTDB_id=518499 JD965_RS07815 WP_013352109.1 1473648..1473932(+) (abrB) [Bacillus siamensis strain B28]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPDNQEYGNGKIILSPEGAK
MLLEEIEEALKDKS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=518499 JD965_RS07815 WP_013352109.1 1473648..1473932(+) (abrB) [Bacillus siamensis strain B28]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTAGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTTGTTGACGGAGACAAAATTGTCTTGAAAAAATACAAACCGCACGGCATTT
GCTTAATGACCGGAGAAATTACTCCCGACAATCAGGAATACGGCAACGGTAAAATCATCTTAAGCCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAAATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

56.522

97.872

0.553