Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   JD965_RS07705 Genome accession   NZ_CP066219
Coordinates   1453147..1453743 (+) Length   198 a.a.
NCBI ID   WP_016936292.1    Uniprot ID   -
Organism   Bacillus siamensis strain B28     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1448147..1458743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JD965_RS07685 (JD965_07685) - 1449274..1449519 (+) 246 WP_013352084.1 YkuS family protein -
  JD965_RS07690 (JD965_07690) - 1449649..1451001 (+) 1353 WP_198697935.1 IS1182 family transposase -
  JD965_RS07695 (JD965_07695) - 1451119..1451925 (-) 807 WP_016936294.1 mechanosensitive ion channel family protein -
  JD965_RS07700 (JD965_07700) - 1452220..1452678 (+) 459 WP_198698800.1 TlpA disulfide reductase family protein -
  JD965_RS07705 (JD965_07705) rok 1453147..1453743 (+) 597 WP_016936292.1 transcriptional regulator Rok Regulator
  JD965_RS07710 (JD965_07710) - 1453765..1454739 (-) 975 WP_016936291.1 hypothetical protein -
  JD965_RS07715 (JD965_07715) - 1454884..1455486 (+) 603 WP_198698801.1 molybdenum cofactor guanylyltransferase -
  JD965_RS07720 (JD965_07720) - 1455538..1456557 (+) 1020 WP_198698802.1 molybdopterin-synthase adenylyltransferase MoeB -
  JD965_RS07725 (JD965_07725) glp 1456575..1457867 (+) 1293 WP_198698803.1 gephyrin-like molybdotransferase Glp -
  JD965_RS07730 (JD965_07730) mobB 1457828..1458349 (+) 522 WP_198698804.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22583.61 Da        Isoelectric Point: 9.4832

>NTDB_id=518498 JD965_RS07705 WP_016936292.1 1453147..1453743(+) (rok) [Bacillus siamensis strain B28]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSSQPQMQSITSIPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETEETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=518498 JD965_RS07705 WP_016936292.1 1453147..1453743(+) (rok) [Bacillus siamensis strain B28]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAGGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACGGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCAGTGCTTGCAGAGCTTGCGGCACAGGAAATGAGAAGCTACCAAAAGCCGCAG
ACACAGCCTCAATCCTCACAGCCGCAAATGCAGTCTATTACGTCTATTCCCGCCGGCATTCCGGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCAAGACCGGGTTCAAAAGCGGCAAAACTGCGCGAAGCAGCCATTAAAACGTTGAAGCGCCACAATG
CGGCGATCAAAAGTTCGGAGCTGCAAAAGGAAATTGAGAAGGAAAGCGGCCTTGAGATCCCTAATATGACAACGTTTATG
CAAAGTTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGAAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

85.052

97.98

0.833