Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   JD965_RS07600 Genome accession   NZ_CP066219
Coordinates   1435678..1436142 (-) Length   154 a.a.
NCBI ID   WP_013352067.1    Uniprot ID   A0AAP7TCI0
Organism   Bacillus siamensis strain B28     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1430678..1441142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JD965_RS07580 (JD965_07580) - 1431158..1432978 (+) 1821 Protein_1450 PAS domain-containing protein -
  JD965_RS07585 (JD965_07585) - 1432959..1434172 (-) 1214 Protein_1451 aminotransferase A -
  JD965_RS07590 (JD965_07590) - 1434374..1434535 (-) 162 WP_016936312.1 hypothetical protein -
  JD965_RS07595 (JD965_07595) cheV 1434724..1435635 (+) 912 WP_049628385.1 chemotaxis protein CheV -
  JD965_RS07600 (JD965_07600) kre 1435678..1436142 (-) 465 WP_013352067.1 YkyB family protein Regulator
  JD965_RS07605 (JD965_07605) - 1436265..1437557 (-) 1293 WP_198698792.1 MFS transporter -
  JD965_RS07610 (JD965_07610) - 1437633..1438127 (-) 495 WP_198698962.1 L,D-transpeptidase family protein -
  JD965_RS07615 (JD965_07615) - 1438202..1439065 (-) 864 WP_198698793.1 metallophosphoesterase -
  JD965_RS07620 (JD965_07620) fadH 1439209..1439973 (+) 765 WP_047475261.1 2,4-dienoyl-CoA reductase -
  JD965_RS07625 (JD965_07625) - 1440092..1440649 (+) 558 WP_198698794.1 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17798.57 Da        Isoelectric Point: 10.4864

>NTDB_id=518497 JD965_RS07600 WP_013352067.1 1435678..1436142(-) (kre) [Bacillus siamensis strain B28]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNLLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=518497 JD965_RS07600 WP_013352067.1 1435678..1436142(-) (kre) [Bacillus siamensis strain B28]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACTTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTAGCCG
CCAACAGGCAGCAGCCCGCTTACCATAAACCTGTGTTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

93.506

100

0.935