Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   JD965_RS05780 Genome accession   NZ_CP066219
Coordinates   1099407..1099985 (+) Length   192 a.a.
NCBI ID   WP_045925287.1    Uniprot ID   A0AAI8N191
Organism   Bacillus siamensis strain B28     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1094407..1104985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JD965_RS20580 - 1094910..1095425 (-) 516 WP_416135388.1 methyl-accepting chemotaxis protein -
  JD965_RS20585 - 1095717..1096304 (-) 588 Protein_1083 protoglobin domain-containing protein -
  JD965_RS05765 (JD965_05765) - 1096323..1097846 (-) 1524 WP_198698646.1 FAD-dependent oxidoreductase -
  JD965_RS05770 (JD965_05770) - 1097970..1098827 (+) 858 WP_007610477.1 SDR family oxidoreductase -
  JD965_RS05775 (JD965_05775) - 1098857..1099090 (-) 234 WP_016938310.1 IDEAL domain-containing protein -
  JD965_RS05780 (JD965_05780) comK 1099407..1099985 (+) 579 WP_045925287.1 competence protein ComK Regulator
  JD965_RS05785 (JD965_05785) - 1100131..1100502 (+) 372 WP_047476728.1 iron chaperone -
  JD965_RS05790 (JD965_05790) - 1100711..1101133 (-) 423 WP_198698647.1 hypothetical protein -
  JD965_RS05795 (JD965_05795) - 1101429..1102139 (-) 711 WP_198698949.1 YrpD family protein -
  JD965_RS05800 (JD965_05800) - 1102335..1102604 (+) 270 WP_016938305.1 excalibur calcium-binding domain-containing protein -
  JD965_RS05805 (JD965_05805) - 1102733..1104085 (+) 1353 WP_198697935.1 IS1182 family transposase -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22301.59 Da        Isoelectric Point: 8.1411

>NTDB_id=518486 JD965_RS05780 WP_045925287.1 1099407..1099985(+) (comK) [Bacillus siamensis strain B28]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKIIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HIPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=518486 JD965_RS05780 WP_045925287.1 1099407..1099985(+) (comK) [Bacillus siamensis strain B28]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTACGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGATCATTGAAAAAGATTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATTGACAGAA
GCTGCCGCTACTTTGGCTCCAGCTATGCCGGGAGAAAAGCGGGAACGTATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCTCA
TGTGCATGTTAAAGATTTTCAACCGACCGCATTCGATGATACAGCGGTCACATTCTCAAACGGCAAAACGATGGAGCTGG
AAGTATCTTATCATTCTTTTGAGAATCAAGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGC
CATATTCCGAAGCGGCAGGAATTCATGCTGTACCCGAAAGAAGAGCGGACTAAAATGATTTACGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

83.333

100

0.833