Detailed information NTG0051848

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: SCIM_RS00670
• Genome accession: NC_018073
• Coordinates: 135861..138290 (+)
• Length: 809 a.a.
• NCBI ID: WP_003077621.1
• Uniprot ID: -
• Organism: Streptococcus intermedius JTH08
• Function: degradation of ComW (predicted from homology) Competence regulation

Genomic Context

Location: 130861..143290

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SCIM_RS00640 (SCIM_0102)	-	131383..132168 (+)	786	WP_003077832.1	hypothetical protein	-
SCIM_RS00650 (SCIM_0103)	rpsB	132806..133588 (+)	783	WP_003077447.1	30S ribosomal protein S2	-
SCIM_RS00655 (SCIM_0104)	tsf	133671..134714 (+)	1044	WP_003074777.1	translation elongation factor Ts	-
SCIM_RS00660 (SCIM_0105)	-	134790..135140 (-)	351	WP_003074775.1	hypothetical protein	-
SCIM_RS00665 (SCIM_0106)	-	135396..135857 (+)	462	WP_003077510.1	CtsR family transcriptional regulator	-
SCIM_RS00670 (SCIM_0107)	clpC	135861..138290 (+)	2430	WP_003077621.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
SCIM_RS00675 (SCIM_0108)	-	138337..138777 (+)	441	WP_003077674.1	GNAT family N-acetyltransferase	-
SCIM_RS00680 (SCIM_0109)	dusB	138853..139824 (-)	972	WP_003077834.1	tRNA dihydrouridine synthase DusB	-
SCIM_RS00685 (SCIM_0110)	hslO	139811..140683 (-)	873	WP_003077705.1	Hsp33 family molecular chaperone HslO	-
SCIM_RS00690 (SCIM_0111)	-	140892..142163 (-)	1272	WP_003077837.1	toxic anion resistance protein	-
SCIM_RS00695 (SCIM_0112)	-	142182..143000 (-)	819	WP_003077806.1	hypothetical protein	-

Sequence

Protein

• Length: 809 a.a.
• Molecular weight: 90057.26 Da
• Isoelectric Point: 6.0573

>NTDB_id=51848 SCIM_RS00670 WP_003077621.1 135861..138290(+) (clpC) [Streptococcus intermedius JTH08]
MKYSKALTESIESAQLLASHFETDYLESWQLLIAMANNPYSVAGSVLNDYPLEIDDFEKAAFHITGKVYQQEGDFTIWPF
SYRMKVLFLTAEQIAGAVHANNLGTEHILLAMLFDQGSLAARILEFIGFSYEDKEGVLRMTDLRKNLEHKASWNKEDLKA
IRHLNKSAAATRQTMANMMGMPPATSGGLEDYTRDLTEMAHMGLLEPIIGRDKEISRILQILSRKTKNNPVLVGDAGVGK
TALALGLAQRVADGQVPNELAKMRVLELDLMNVVAGTRFRGDFEERMNNIINDIEADGHVILFIDELHTIMGSGSGIDST
LDAANILKPALAKGTLRTIGATTQEEYQKYIEKDAALSRRFAKVTIEEATVADSIAILQGLKKSYEDHHKVVITDSAIET
AVKYAHRYLTSKHLPDSAIDLLDEAAARVQNKSPQNHVKAELSAADEALMAGDWNKVDTLLEKESQPIVYKLRVKDEDVL
ATLSSLSGIPVQKLTQTDAKKYLNLEKELHKRVIGQNEAISAISRAIRRNQSGIRTSKRPIGSFMFLGPTGVGKTELAKA
LAEVLFDDETALIRFDMSEYMEKFAASRLNGAPPGYVGYEEGGELTEKVRNRPYSVLLFDEVEKAHPDIFNVLLQVLDDG
VLTDSKGRKVDFSNTIIIMTSNLGATSLRDDKTVGFGARDVRFDHENMEKRMMEELKKAYRPEFINRIDEKVVFHSLTSE
DMQEVVKIMVQPLISSLAEKGIKLKFQPSALKLLAQEGYDPEMGARPLRRILQTRVEDHLSELLLAGELKTGQSLKVGVK
AGKLKFEVL

Nucleotide

• Length: 2430 bp

>NTDB_id=51848 SCIM_RS00670 WP_003077621.1 135861..138290(+) (clpC) [Streptococcus intermedius JTH08]
ATGAAATATTCAAAAGCTTTGACAGAAAGTATTGAATCAGCACAGTTATTAGCAAGTCATTTTGAAACGGATTATTTAGA
GTCTTGGCAGCTGTTGATTGCTATGGCAAATAATCCTTATAGTGTTGCTGGTTCAGTTTTAAATGATTACCCACTTGAAA
TTGATGATTTTGAAAAGGCAGCTTTTCATATCACGGGGAAAGTCTATCAACAAGAGGGAGACTTTACTATTTGGCCGTTT
TCTTATCGCATGAAAGTGCTATTTTTGACTGCTGAACAAATTGCAGGGGCGGTTCATGCTAATAATCTTGGGACAGAGCA
TATATTGCTAGCTATGTTATTTGACCAAGGAAGCTTGGCAGCGCGTATTCTTGAATTTATTGGTTTTAGTTACGAAGATA
AAGAAGGCGTTTTGCGCATGACAGATCTGCGGAAAAATTTAGAGCATAAGGCCAGCTGGAATAAAGAGGATTTAAAGGCT
ATTCGTCACCTAAATAAAAGTGCTGCAGCAACAAGACAAACGATGGCTAATATGATGGGAATGCCTCCTGCAACCAGTGG
CGGACTAGAAGATTATACTCGTGATCTAACTGAAATGGCTCATATGGGCCTTTTAGAACCGATCATTGGGCGGGATAAAG
AGATTTCTCGCATACTTCAGATTTTAAGTCGTAAGACAAAAAACAATCCGGTTTTGGTAGGAGATGCAGGAGTTGGGAAG
ACAGCATTAGCTCTGGGTTTGGCGCAACGTGTGGCAGATGGTCAAGTTCCAAATGAGCTTGCAAAGATGAGAGTTTTAGA
GCTAGATTTAATGAATGTGGTGGCTGGAACTCGTTTTCGTGGTGATTTTGAAGAACGGATGAACAATATTATCAATGATA
TTGAAGCAGATGGGCATGTTATTCTCTTCATTGATGAGCTTCATACCATTATGGGTTCTGGCAGCGGGATTGACTCGACA
TTAGATGCAGCAAATATTCTCAAGCCGGCTTTGGCTAAAGGAACGCTCAGAACGATCGGTGCAACAACACAAGAAGAGTA
CCAAAAATATATCGAAAAAGATGCAGCTCTTTCACGAAGATTTGCCAAGGTTACTATTGAAGAAGCAACGGTAGCTGACA
GCATTGCTATTTTACAGGGACTCAAGAAAAGTTATGAAGATCACCACAAGGTCGTGATTACGGATTCGGCAATTGAGACG
GCTGTTAAGTATGCGCATCGTTACCTGACTAGTAAACATCTACCTGACTCAGCGATTGACTTGCTAGACGAAGCTGCTGC
AAGGGTACAAAATAAAAGCCCGCAAAATCACGTAAAAGCAGAATTGAGTGCAGCAGATGAGGCTTTAATGGCAGGCGATT
GGAACAAAGTTGATACGTTGTTGGAGAAAGAGAGTCAGCCAATTGTTTATAAATTAAGGGTGAAAGACGAGGATGTTTTA
GCAACACTCAGCAGTTTATCAGGTATTCCTGTGCAAAAGTTGACACAAACAGATGCGAAGAAATACCTCAATTTAGAAAA
GGAGTTACACAAACGAGTTATCGGGCAGAATGAAGCAATTTCTGCTATTAGTCGAGCGATTCGGCGCAATCAATCTGGTA
TCCGCACTAGCAAGCGCCCAATTGGCTCCTTTATGTTCTTAGGGCCAACCGGGGTCGGAAAAACTGAGCTAGCTAAGGCT
TTGGCAGAAGTTCTCTTTGATGACGAAACAGCGTTAATTCGTTTTGATATGTCCGAATACATGGAGAAATTTGCTGCTAG
TCGTCTCAATGGAGCACCTCCAGGCTATGTTGGTTATGAAGAAGGGGGAGAATTAACTGAAAAGGTGCGTAATCGTCCTT
ACTCTGTGCTCCTCTTTGACGAAGTGGAAAAAGCTCATCCTGATATTTTCAATGTGCTGCTCCAAGTCCTAGATGACGGG
GTTCTGACGGATAGCAAGGGCCGTAAGGTAGATTTTTCCAATACTATTATCATTATGACCAGCAATCTTGGTGCGACAAG
TTTACGGGACGATAAGACGGTTGGGTTCGGAGCAAGAGATGTTCGCTTTGATCATGAAAATATGGAAAAACGAATGATGG
AAGAGCTAAAGAAAGCTTATCGTCCAGAATTTATTAACCGAATTGATGAAAAGGTTGTTTTTCACAGTTTGACTAGCGAA
GACATGCAGGAAGTGGTGAAAATTATGGTGCAACCGCTCATTTCTAGTCTTGCAGAAAAAGGAATTAAACTCAAATTCCA
ACCGAGTGCTTTGAAGCTTCTAGCTCAAGAGGGCTATGATCCTGAAATGGGAGCTCGTCCATTGCGTCGAATTCTACAAA
CTCGAGTGGAAGACCATTTATCAGAATTACTTTTAGCAGGTGAGCTAAAAACGGGGCAAAGCTTGAAAGTCGGTGTCAAG
GCTGGAAAATTGAAGTTTGAAGTGCTCTGA

Domains

Predicted by InterproScan.

• Clp amino terminal domain, pathogenicity island component (Clp_N) (14-60)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (91-133)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (717-797)

• ATPase family associated with various cellular activities (AAA) (AAA) (231-349)

• AAA lid domain (AAA_lid_9) (371-446)

• AAA domain (Cdc48 subfamily) (AAA_2) (539-710)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Streptococcus pneumoniae TIGR4	76.819	100	0.77
clpC	Streptococcus pneumoniae Rx1	76.819	100	0.77
clpC	Streptococcus pneumoniae D39	76.819	100	0.77
clpC	Streptococcus mutans UA159	66.258	100	0.667
clpC	Streptococcus thermophilus LMG 18311	65.233	100	0.656
clpC	Streptococcus thermophilus LMD-9	64.865	100	0.653
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	49.399	100	0.508
clpC	Bacillus subtilis subsp. subtilis str. 168	45.636	99.135	0.452