Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   JD965_RS00255 Genome accession   NZ_CP066219
Coordinates   45884..46174 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus siamensis strain B28     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 40884..51174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JD965_RS00215 (JD965_00215) darA 40901..41230 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  JD965_RS00220 (JD965_00220) - 41243..41683 (+) 441 WP_047478049.1 YaaR family protein -
  JD965_RS00225 (JD965_00225) holB 41695..42684 (+) 990 WP_016936513.1 DNA polymerase III subunit delta' -
  JD965_RS00230 (JD965_00230) ricT 42687..43514 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  JD965_RS00235 (JD965_00235) yabA 43529..43888 (+) 360 WP_016936514.1 replication initiation-control protein YabA -
  JD965_RS00240 (JD965_00240) - 43949..44692 (+) 744 WP_047478053.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  JD965_RS00245 (JD965_00245) - 44679..44978 (+) 300 WP_047478056.1 GIY-YIG nuclease family protein -
  JD965_RS00250 (JD965_00250) rsmI 44953..45834 (+) 882 WP_047478059.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  JD965_RS00255 (JD965_00255) abrB 45884..46174 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  JD965_RS00260 (JD965_00260) metG 46658..48649 (+) 1992 WP_198698293.1 methionine--tRNA ligase -
  JD965_RS00265 (JD965_00265) - 48725..49492 (+) 768 WP_016936519.1 TatD family hydrolase -
  JD965_RS00270 (JD965_00270) - 49627..50952 (+) 1326 WP_099744504.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=518471 JD965_RS00255 WP_169510469.1 45884..46174(-) (abrB) [Bacillus siamensis strain B28]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=518471 JD965_RS00255 WP_169510469.1 45884..46174(-) (abrB) [Bacillus siamensis strain B28]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTAGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTGAAAAAATATAAACCAAACA
TGACTTGCCAAGTTACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAATCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979