Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   JD965_RS00020 Genome accession   NZ_CP066219
Coordinates   3029..4141 (+) Length   370 a.a.
NCBI ID   WP_013350724.1    Uniprot ID   A0AAE2NV61
Organism   Bacillus siamensis strain B28     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JD965_RS00005 (JD965_00005) dnaA 1..1341 (+) 1341 WP_016937312.1 chromosomal replication initiator protein DnaA -
  JD965_RS00010 (JD965_00010) dnaN 1526..2662 (+) 1137 WP_021494589.1 DNA polymerase III subunit beta -
  JD965_RS00015 (JD965_00015) rlbA 2798..3013 (+) 216 WP_004392910.1 ribosome maturation protein RlbA -
  JD965_RS00020 (JD965_00020) recF 3029..4141 (+) 1113 WP_013350724.1 DNA replication/repair protein RecF Machinery gene
  JD965_RS00025 (JD965_00025) remB 4159..4404 (+) 246 WP_004392908.1 extracellular matrix regulator RemB -
  JD965_RS00030 (JD965_00030) gyrB 4461..6377 (+) 1917 WP_029575274.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  JD965_RS00035 (JD965_00035) gyrA 6594..9053 (+) 2460 WP_198698290.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42414.36 Da        Isoelectric Point: 7.0883

>NTDB_id=518469 JD965_RS00020 WP_013350724.1 3029..4141(+) (recF) [Bacillus siamensis strain B28]
MYIQNLELTSYRNYERAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVMKRNGD
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSAVYLYDLSLYQKILSQR
NHFLKQLQSRKQTDRTMLDVLTDQLIEAAAKVVAKRLQFTAQLEKWAQPIHSGISRGLEELTLKYHTALDVSDPKDLSKI
GNSYQESFSKLKEKEIERGVTLFGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHETLHQAGMFRVENGALVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=518469 JD965_RS00020 WP_013350724.1 3029..4141(+) (recF) [Bacillus siamensis strain B28]
TTGTATATCCAAAATTTAGAATTAACATCCTACCGTAATTATGAGCGCGCTGAGCTTCAATTCGAAAACAAGGTGAATGT
GATCATCGGAGAGAACGCCCAAGGCAAAACCAATCTGATGGAAGCCATCTATGTCCTTTCGATGGCAAAATCACACCGCA
CCTCAAATGATAAAGAACTTATACGGTGGGACGAAGACTATGCTAAAATAGAAGGAAGAGTGATGAAGCGCAACGGCGAC
ATCCCGATGCAGTTAGTCATCTCCAAAAAAGGTAAAAAGGGCAAGGTCAATCACATAGAACAGCAAAAACTCAGTCAGTA
TGTCGGAGCGCTGAACACCATTATGTTCGCCCCGGAGGACTTAAATCTCGTCAAAGGCAGCCCGCAGGTCAGGAGGAGAT
TTCTTGATATGGAGATCGGGCAGGTTTCTGCTGTTTATCTGTATGATTTATCTCTTTATCAAAAAATCCTTTCCCAGCGG
AATCATTTTCTGAAACAGCTGCAAAGCCGGAAACAGACTGACCGGACTATGCTTGACGTTCTCACTGATCAGCTGATTGA
GGCAGCCGCAAAAGTTGTCGCCAAACGTCTGCAGTTTACGGCGCAGCTTGAAAAATGGGCGCAGCCGATCCATTCGGGCA
TTTCCCGGGGGCTTGAGGAACTGACGCTTAAGTATCACACGGCGCTTGATGTATCAGATCCTAAAGATTTGTCGAAAATA
GGTAACAGCTACCAGGAGTCTTTTTCGAAATTAAAAGAAAAAGAAATAGAACGGGGCGTCACCTTATTCGGACCGCATCG
GGATGATGTCCTTTTTTATGTGAACGGACGCGATGTGCAGACTTACGGTTCGCAGGGACAGCAGCGTACGACGGCTTTGT
CTTTGAAACTGGCCGAAATAGATTTGATTCATGAAGAAATCGGAGAATATCCCATTTTACTTTTGGATGATGTACTAAGC
GAGCTGGATGATTACCGCCAGTCCCATTTGCTTCATACAATCCAAGGCCGTGTGCAGACATTTGTCACCACGACGAGCGT
GGATGGCATTGACCACGAAACCTTACATCAAGCAGGAATGTTCCGTGTGGAAAACGGTGCGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

94.865

100

0.949