Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   JC776_RS16545 Genome accession   NZ_CP066194
Coordinates   3230888..3231166 (-) Length   92 a.a.
NCBI ID   WP_012094321.1    Uniprot ID   A7GPS3
Organism   Bacillus cytotoxicus strain E8.1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3225888..3236166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC776_RS16525 (JC776_16525) - 3226383..3226982 (-) 600 WP_087094943.1 type 1 glutamine amidotransferase family protein -
  JC776_RS16530 (JC776_16530) - 3227634..3229325 (+) 1692 WP_087094942.1 M3 family oligoendopeptidase -
  JC776_RS16535 (JC776_16535) - 3229458..3229679 (-) 222 WP_041809735.1 hypothetical protein -
  JC776_RS16540 (JC776_16540) - 3229875..3230669 (-) 795 WP_012094322.1 LysM peptidoglycan-binding domain-containing protein -
  JC776_RS16545 (JC776_16545) abrB 3230888..3231166 (-) 279 WP_012094321.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  JC776_RS16550 (JC776_16550) - 3231591..3232421 (-) 831 WP_087094941.1 SDR family oxidoreductase -
  JC776_RS16555 (JC776_16555) - 3232443..3233150 (-) 708 WP_179196701.1 SGNH/GDSL hydrolase family protein -
  JC776_RS16560 (JC776_16560) - 3233128..3233748 (-) 621 WP_012094317.1 TetR/AcrR family transcriptional regulator -
  JC776_RS16565 (JC776_16565) - 3233987..3234612 (-) 626 Protein_3215 DDE-type integrase/transposase/recombinase -
  JC776_RS16570 (JC776_16570) - 3234840..3235505 (-) 666 WP_162533160.1 4'-phosphopantetheinyl transferase superfamily protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10433.25 Da        Isoelectric Point: 6.3246

>NTDB_id=518416 JC776_RS16545 WP_012094321.1 3230888..3231166(-) (abrB) [Bacillus cytotoxicus strain E8.1]
MKSTGIIRKVDELGRIVIPKELRDMLDIGIKSPLEIFVENERIVLKKYVPYNTCQITGEVSNDNISLANGKIILSPEGAK
YLIQELENYLVK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=518416 JC776_RS16545 WP_012094321.1 3230888..3231166(-) (abrB) [Bacillus cytotoxicus strain E8.1]
ATGAAATCAACTGGAATTATCCGAAAAGTGGATGAACTTGGAAGAATTGTTATCCCAAAAGAATTAAGAGACATGTTAGA
TATTGGCATTAAATCACCTTTGGAAATATTTGTAGAAAATGAAAGAATCGTTTTAAAGAAATATGTACCTTACAACACTT
GTCAAATAACAGGAGAAGTATCGAATGATAATATTTCACTTGCAAATGGTAAAATTATTTTAAGTCCTGAAGGGGCAAAA
TATTTAATTCAAGAGTTAGAGAACTATTTAGTAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7GPS3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

63.333

97.826

0.62