Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   JC776_RS08285 Genome accession   NZ_CP066194
Coordinates   1646329..1647450 (-) Length   373 a.a.
NCBI ID   WP_011983151.1    Uniprot ID   A7GJS2
Organism   Bacillus cytotoxicus strain E8.1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1641329..1652450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC776_RS08275 (JC776_08275) gyrA 1641812..1644277 (-) 2466 WP_011983153.1 DNA gyrase subunit A -
  JC776_RS08280 (JC776_08280) gyrB 1644368..1646290 (-) 1923 WP_011983152.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  JC776_RS08285 (JC776_08285) recF 1646329..1647450 (-) 1122 WP_011983151.1 DNA replication/repair protein RecF Machinery gene
  JC776_RS08290 (JC776_08290) yaaA 1647463..1647675 (-) 213 WP_011983150.1 S4 domain-containing protein YaaA -
  JC776_RS08295 (JC776_08295) dnaN 1647800..1648945 (-) 1146 WP_087095647.1 DNA polymerase III subunit beta -
  JC776_RS08300 (JC776_08300) dnaA 1649123..1650463 (-) 1341 WP_048723589.1 chromosomal replication initiator protein DnaA -
  JC776_RS08305 (JC776_08305) rpmH 1651028..1651162 (+) 135 WP_000831901.1 50S ribosomal protein L34 -
  JC776_RS08310 (JC776_08310) rnpA 1651239..1651586 (+) 348 WP_012096472.1 ribonuclease P protein component -
  JC776_RS08315 (JC776_08315) spoIIIJ 1651645..1652412 (+) 768 WP_012096471.1 YidC family membrane integrase SpoIIIJ -

Sequence

Protein


Download         Length: 373 a.a.        Molecular weight: 43134.46 Da        Isoelectric Point: 6.7810

>NTDB_id=518390 JC776_RS08285 WP_011983151.1 1646329..1647450(-) (recF) [Bacillus cytotoxicus strain E8.1]
MFISEIQLKNYRNYEDLNLSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEDYGKIKGRLQKRNSS
VSLELNISKKGKKAKLNELEQQKLSQYIGEMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQR
NHLLKAMQGKNEETMLDVFTLQLIEHGTKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKIKE
VYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYAEVKEYPILLLDDVLSEL
DDYRQSHLLNTIQGKVQTFVTTTSVDGIEHETLKKAKTIHVKSGTVDCEIDRI

Nucleotide


Download         Length: 1122 bp        

>NTDB_id=518390 JC776_RS08285 WP_011983151.1 1646329..1647450(-) (recF) [Bacillus cytotoxicus strain E8.1]
TTGTTTATTTCAGAAATACAATTAAAAAATTATCGAAATTATGAAGATTTAAACCTTTCTTTTGAGGATAAAGTCAATGT
AATCATTGGTGAAAATGCACAAGGGAAAACAAATTTGATGGAAGCGATCTATGTGTTAGCAATGGCGAAATCTCATAGAA
CTTCAAATGATCGTGAACTCATCCGATGGGATGAGGATTATGGTAAAATAAAAGGTAGATTACAAAAACGAAATAGTTCC
GTATCTTTGGAATTAAATATTTCTAAAAAAGGAAAAAAGGCAAAATTGAATGAACTTGAACAACAAAAGTTGAGCCAATA
TATTGGTGAGATGAACGTTGTTATGTTTGCCCCTGAAGATTTAAATCTTGTAAAAGGAAGTCCTCAAGTCAGAAGACGCT
TTTTAGATATGGAATTAGGACAAATAGCTCCTGTTTATTTGTATGAATTAAGTCAATATCAAAAAGTGCTCACACAACGA
AACCATTTGCTTAAGGCAATGCAAGGTAAAAATGAGGAAACGATGTTGGATGTATTTACGCTTCAACTTATTGAACATGG
TACGAAAATTCTACAAAAACGTTTTGAATTCTTACATTTACTACAAGAGTGGGCTGCTCCAATCCATCGTGGGATTAGCA
GAGGGCTTGAGGAATTGGAAATCGTTTATAAGCCAAGTGTAGATGTATCAGAATCAATGGATTTGTCGAAAATAAAAGAA
GTATACTATGAAAGTTTTCAATCTGTGAAACAACGTGAAATTTTCCGTGGTACGACTTTAATTGGTCCTCATCGTGATGA
TTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGCTCACAAGGCCAGCAACGAACAACTGCACTATCCCTAA
AATTAGCTGAAATTGAATTGATTTATGCAGAGGTAAAAGAGTACCCAATTCTTTTATTAGATGATGTATTATCAGAATTA
GATGATTACCGTCAATCACATCTTTTAAATACAATTCAAGGAAAAGTGCAAACATTTGTGACAACGACGAGTGTCGACGG
AATTGAACACGAAACATTAAAAAAAGCGAAAACAATTCATGTAAAAAGCGGCACGGTAGATTGTGAAATAGACAGAATAT
AA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-346)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7GJS2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

66.576

98.66

0.657