Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   JC776_RS08090 Genome accession   NZ_CP066194
Coordinates   1609669..1609953 (+) Length   94 a.a.
NCBI ID   WP_011983177.1    Uniprot ID   A7GJU9
Organism   Bacillus cytotoxicus strain E8.1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1604669..1614953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC776_RS08070 (JC776_08070) rsmA 1604790..1605668 (-) 879 WP_011983181.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
  JC776_RS08075 (JC776_08075) rnmV 1605665..1606222 (-) 558 WP_011983180.1 ribonuclease M5 -
  JC776_RS08080 (JC776_08080) - 1606377..1607144 (-) 768 WP_087094322.1 TatD family hydrolase -
  JC776_RS08085 (JC776_08085) metG 1607304..1609283 (-) 1980 WP_011983178.1 methionine--tRNA ligase -
  JC776_RS08090 (JC776_08090) abrB 1609669..1609953 (+) 285 WP_011983177.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  JC776_RS08095 (JC776_08095) rsmI 1609974..1610849 (-) 876 WP_048721198.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  JC776_RS08100 (JC776_08100) - 1610818..1611108 (-) 291 WP_011983175.1 GIY-YIG nuclease family protein -
  JC776_RS08105 (JC776_08105) - 1611095..1611835 (-) 741 WP_048721201.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  JC776_RS08110 (JC776_08110) yabA 1611965..1612315 (-) 351 WP_011983173.1 DNA replication initiation control protein YabA -
  JC776_RS08115 (JC776_08115) - 1612330..1613157 (-) 828 WP_011983172.1 stage 0 sporulation family protein -
  JC776_RS08120 (JC776_08120) holB 1613163..1614146 (-) 984 WP_011983171.1 DNA polymerase III subunit delta' -
  JC776_RS08125 (JC776_08125) tmk 1614182..1614808 (-) 627 WP_087094320.1 dTMP kinase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10563.27 Da        Isoelectric Point: 6.4662

>NTDB_id=518388 JC776_RS08090 WP_011983177.1 1609669..1609953(+) (abrB) [Bacillus cytotoxicus strain E8.1]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDHNLSLADGKIILSKEGAE
QILNELQHYIQSAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=518388 JC776_RS08090 WP_011983177.1 1609669..1609953(+) (abrB) [Bacillus cytotoxicus strain E8.1]
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGCCGCGTGGTAATTCCGATCGAACTACGTCGTACATTAGG
TATTGCAGAAAAGGATGCTCTTGAAATTTACGTGGATGACGAAAAAATCATCCTAAAAAAATACAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCAGATCATAACTTATCTTTAGCTGACGGTAAAATTATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAATTACAACACTACATTCAATCAGCAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)

AbrB C-terminal domain (AbrB_C)

(53-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7GJU9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

86.17

100

0.862