Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   JC776_RS02445 Genome accession   NZ_CP066194
Coordinates   484789..485112 (+) Length   107 a.a.
NCBI ID   WP_011984082.1    Uniprot ID   A7GMH1
Organism   Bacillus cytotoxicus strain E8.1     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 479789..490112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC776_RS02430 (JC776_02430) - 480259..481623 (-) 1365 WP_011984085.1 aldehyde dehydrogenase -
  JC776_RS02435 (JC776_02435) - 481830..484217 (-) 2388 WP_011984084.1 immune inhibitor A domain-containing protein -
  JC776_RS02440 (JC776_02440) - 484580..484711 (+) 132 WP_011984083.1 anti-repressor SinI family protein -
  JC776_RS02445 (JC776_02445) sinR 484789..485112 (+) 324 WP_011984082.1 helix-turn-helix domain-containing protein Regulator
  JC776_RS02450 (JC776_02450) calY 485191..485784 (-) 594 WP_011984081.1 biofilm matrix protein CalY -
  JC776_RS02455 (JC776_02455) - 486015..486701 (-) 687 WP_011984080.1 DUF4047 domain-containing protein -
  JC776_RS02460 (JC776_02460) - 486792..487382 (-) 591 WP_011984079.1 TasA family protein -
  JC776_RS02465 (JC776_02465) - 487428..488003 (-) 576 WP_011984078.1 signal peptidase I -
  JC776_RS02470 (JC776_02470) - 488135..489406 (-) 1272 WP_011984077.1 D-alanyl-D-alanine carboxypeptidase family protein -
  JC776_RS02475 (JC776_02475) - 489564..489771 (-) 208 Protein_501 hypothetical protein -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12380.21 Da        Isoelectric Point: 8.6049

>NTDB_id=518373 JC776_RS02445 WP_011984082.1 484789..485112(+) (sinR) [Bacillus cytotoxicus strain E8.1]
MIGERIKRLRLQRGISLTELAEKAGVAKSYISSIERNLQQNPSIQFLEKIAAVLQIPIDTLLHDTTPLENQLDSEWTHLV
KEAMNSGVSKEQFREFIEFSKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=518373 JC776_RS02445 WP_011984082.1 484789..485112(+) (sinR) [Bacillus cytotoxicus strain E8.1]
ATGATTGGAGAACGTATAAAACGCCTTCGCTTACAAAGAGGGATTTCTTTAACAGAACTTGCTGAAAAGGCCGGTGTTGC
AAAGTCCTACATTAGCTCCATTGAACGTAATTTACAACAAAATCCGTCCATTCAATTTTTAGAAAAAATCGCAGCCGTTC
TGCAAATACCAATTGACACACTTCTTCATGACACAACACCGTTAGAAAATCAATTAGACTCTGAATGGACACACCTTGTT
AAAGAAGCAATGAACTCTGGTGTCTCAAAAGAACAATTCCGTGAATTCATTGAGTTTAGTAAATGGAAACAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-61)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7GMH1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

64.22

100

0.654