Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   DESACI_RS17405 Genome accession   NC_018068
Coordinates   3801963..3802889 (-) Length   308 a.a.
NCBI ID   WP_085939236.1    Uniprot ID   -
Organism   Desulfosporosinus acidiphilus SJ4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3796963..3807889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DESACI_RS17385 (Desaci_3644) - 3798353..3798709 (-) 357 WP_014828513.1 putative DNA-binding protein -
  DESACI_RS17390 (Desaci_3645) - 3798787..3800088 (-) 1302 WP_014828514.1 amidohydrolase -
  DESACI_RS17395 (Desaci_3646) mtnA 3800121..3801158 (-) 1038 WP_014828515.1 S-methyl-5-thioribose-1-phosphate isomerase -
  DESACI_RS17400 (Desaci_3647) mtnP 3801175..3801963 (-) 789 WP_242833198.1 S-methyl-5'-thioadenosine phosphorylase -
  DESACI_RS17405 (Desaci_3648) pilA 3801963..3802889 (-) 927 WP_085939236.1 signal recognition particle-docking protein FtsY Machinery gene
  DESACI_RS17410 (Desaci_3649) - 3803509..3803751 (-) 243 WP_014828518.1 hypothetical protein -
  DESACI_RS17415 (Desaci_3650) smc 3803744..3807331 (-) 3588 WP_014828519.1 chromosome segregation protein SMC -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 33749.89 Da        Isoelectric Point: 5.0851

>NTDB_id=51836 DESACI_RS17405 WP_085939236.1 3801963..3802889(-) (pilA) [Desulfosporosinus acidiphilus SJ4]
MAGFFSQLKAGLTKTRQNFVEKVEQIFTGYKKIDEELYEELEEVLIRSDVGVNTSMELVERLRKEVKQRKISDPQELTKV
LQELIVELLGKEETIAFAERGPSVILVVGVNGVGKTTTIGKLANRFKLDGKRVVLAAGDTFRAAAIDQLEVWGERSGVEV
IKQREGADPAAVAYDAVQAAKSREMDVVLVDTAGRLHNKVNLMEELRKVKRVIEREIPGAPHEVLLVLDATTGQNALQQA
KLFQEVAGVTGIVLTKLDGTAKGGVVLGIQGETRIPVKWIGIGEGMEDLRPFVPKDFAEALFGSSEEG

Nucleotide


Download         Length: 927 bp        

>NTDB_id=51836 DESACI_RS17405 WP_085939236.1 3801963..3802889(-) (pilA) [Desulfosporosinus acidiphilus SJ4]
TTGGCAGGTTTTTTCTCTCAGCTTAAAGCTGGTCTTACGAAAACACGTCAAAATTTTGTTGAAAAGGTTGAACAAATATT
TACTGGCTATAAAAAAATTGATGAAGAGTTATATGAGGAATTGGAAGAAGTTTTAATTCGTTCGGATGTCGGAGTAAACA
CTTCTATGGAGTTAGTTGAACGTTTGCGTAAAGAGGTGAAGCAGCGTAAGATTTCTGACCCTCAAGAGTTAACTAAGGTT
CTGCAAGAGTTAATCGTAGAATTATTAGGGAAAGAAGAAACTATTGCGTTCGCCGAGCGTGGCCCGAGTGTTATTTTGGT
GGTTGGGGTTAATGGGGTTGGTAAAACAACGACCATTGGGAAACTGGCGAACCGCTTTAAACTGGATGGGAAACGTGTTG
TTTTGGCTGCCGGGGATACATTCAGGGCGGCGGCTATTGATCAATTGGAGGTTTGGGGAGAACGTTCCGGGGTTGAGGTA
ATTAAACAGCGTGAAGGGGCTGATCCGGCAGCTGTTGCTTATGATGCGGTTCAGGCTGCCAAGTCTCGCGAGATGGATGT
GGTGCTTGTGGATACAGCAGGCCGGCTCCATAATAAGGTGAATCTTATGGAGGAACTTCGTAAGGTTAAACGTGTCATTG
AGCGGGAAATCCCGGGAGCGCCTCATGAAGTACTTCTTGTTTTAGATGCCACAACAGGCCAAAATGCTTTACAGCAGGCT
AAGTTATTCCAGGAAGTTGCTGGGGTTACCGGTATAGTATTGACCAAACTCGATGGGACGGCCAAAGGCGGCGTTGTCTT
AGGAATTCAGGGGGAAACACGAATTCCGGTGAAATGGATTGGTATCGGCGAAGGTATGGAAGATTTGCGTCCCTTTGTTC
CTAAAGACTTTGCCGAGGCTCTTTTTGGCAGCTCTGAGGAGGGATAA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(20-83)

SRP54-type protein, GTPase domain (SRP54)

(102-302)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

49.338

98.052

0.484

Multiple sequence alignment