Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   JC775_RS00560 Genome accession   NZ_CP066192
Coordinates   112470..112754 (-) Length   94 a.a.
NCBI ID   WP_011983177.1    Uniprot ID   A7GJU9
Organism   Bacillus cytotoxicus strain E17.4     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 107470..117754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC775_RS00525 (JC775_00525) tmk 107615..108241 (+) 627 WP_011983170.1 dTMP kinase -
  JC775_RS00530 (JC775_00530) holB 108277..109260 (+) 984 WP_011983171.1 DNA polymerase III subunit delta' -
  JC775_RS00535 (JC775_00535) - 109266..110093 (+) 828 WP_011983172.1 stage 0 sporulation family protein -
  JC775_RS00540 (JC775_00540) yabA 110108..110458 (+) 351 WP_011983173.1 DNA replication initiation control protein YabA -
  JC775_RS00545 (JC775_00545) - 110588..111328 (+) 741 WP_048721201.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  JC775_RS00550 (JC775_00550) - 111315..111605 (+) 291 WP_011983175.1 GIY-YIG nuclease family protein -
  JC775_RS00555 (JC775_00555) rsmI 111574..112449 (+) 876 WP_048721198.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  JC775_RS00560 (JC775_00560) abrB 112470..112754 (-) 285 WP_011983177.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  JC775_RS00565 (JC775_00565) metG 113140..115119 (+) 1980 WP_048721195.1 methionine--tRNA ligase -
  JC775_RS00570 (JC775_00570) - 115279..116046 (+) 768 WP_087097516.1 TatD family hydrolase -
  JC775_RS00575 (JC775_00575) rnmV 116201..116758 (+) 558 WP_011983180.1 ribonuclease M5 -
  JC775_RS00580 (JC775_00580) rsmA 116755..117633 (+) 879 WP_011983181.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10563.27 Da        Isoelectric Point: 6.4662

>NTDB_id=518327 JC775_RS00560 WP_011983177.1 112470..112754(-) (abrB) [Bacillus cytotoxicus strain E17.4]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDHNLSLADGKIILSKEGAE
QILNELQHYIQSAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=518327 JC775_RS00560 WP_011983177.1 112470..112754(-) (abrB) [Bacillus cytotoxicus strain E17.4]
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGCCGCGTGGTAATTCCGATCGAACTACGTCGTACATTAGG
TATTGCAGAAAAGGATGCTCTTGAAATTTACGTGGATGACGAAAAAATCATTCTAAAAAAATACAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCAGATCATAACTTATCTTTAGCTGACGGTAAAATTATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAATTACAACACTACATTCAATCAGCAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)

AbrB C-terminal domain (AbrB_C)

(53-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7GJU9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

86.17

100

0.862