Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   JC775_RS00465 Genome accession   NZ_CP066192
Coordinates   92876..93997 (+) Length   373 a.a.
NCBI ID   WP_011983151.1    Uniprot ID   A7GJS2
Organism   Bacillus cytotoxicus strain E17.4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 87876..98997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC775_RS00435 (JC775_00435) spoIIIJ 87914..88681 (-) 768 WP_012096471.1 YidC family membrane integrase SpoIIIJ -
  JC775_RS00440 (JC775_00440) rnpA 88740..89087 (-) 348 WP_012096472.1 ribonuclease P protein component -
  JC775_RS00445 (JC775_00445) rpmH 89164..89298 (-) 135 WP_000831901.1 50S ribosomal protein L34 -
  JC775_RS00450 (JC775_00450) dnaA 89863..91203 (+) 1341 WP_048723589.1 chromosomal replication initiator protein DnaA -
  JC775_RS00455 (JC775_00455) dnaN 91381..92526 (+) 1146 WP_048723591.1 DNA polymerase III subunit beta -
  JC775_RS00460 (JC775_00460) yaaA 92651..92863 (+) 213 WP_011983150.1 S4 domain-containing protein YaaA -
  JC775_RS00465 (JC775_00465) recF 92876..93997 (+) 1122 WP_011983151.1 DNA replication/repair protein RecF Machinery gene
  JC775_RS00470 (JC775_00470) gyrB 94036..95958 (+) 1923 WP_048723593.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  JC775_RS00475 (JC775_00475) gyrA 96049..98514 (+) 2466 WP_011983153.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 373 a.a.        Molecular weight: 43134.46 Da        Isoelectric Point: 6.7810

>NTDB_id=518326 JC775_RS00465 WP_011983151.1 92876..93997(+) (recF) [Bacillus cytotoxicus strain E17.4]
MFISEIQLKNYRNYEDLNLSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEDYGKIKGRLQKRNSS
VSLELNISKKGKKAKLNELEQQKLSQYIGEMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQR
NHLLKAMQGKNEETMLDVFTLQLIEHGTKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKIKE
VYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYAEVKEYPILLLDDVLSEL
DDYRQSHLLNTIQGKVQTFVTTTSVDGIEHETLKKAKTIHVKSGTVDCEIDRI

Nucleotide


Download         Length: 1122 bp        

>NTDB_id=518326 JC775_RS00465 WP_011983151.1 92876..93997(+) (recF) [Bacillus cytotoxicus strain E17.4]
TTGTTTATTTCAGAAATACAATTAAAAAATTATCGAAATTATGAAGATTTAAACCTTTCTTTTGAGGATAAAGTCAATGT
AATCATTGGTGAAAATGCACAAGGGAAAACAAATTTGATGGAAGCGATCTATGTGTTAGCAATGGCGAAATCTCATAGAA
CTTCAAATGATCGTGAACTCATCCGATGGGATGAGGATTATGGTAAAATAAAAGGTAGATTACAAAAACGAAATAGTTCC
GTATCTTTGGAATTAAATATTTCTAAAAAAGGAAAAAAGGCAAAATTGAATGAACTTGAACAACAAAAGTTGAGCCAATA
TATTGGTGAGATGAACGTTGTTATGTTTGCCCCTGAAGATTTAAATCTTGTAAAAGGAAGTCCTCAAGTCAGAAGACGCT
TTTTAGATATGGAATTAGGACAAATAGCTCCTGTTTATTTGTATGAATTAAGTCAATATCAAAAAGTGCTCACACAACGA
AACCATTTGCTTAAGGCAATGCAAGGTAAAAATGAGGAAACGATGTTGGATGTATTTACGCTTCAACTTATTGAACATGG
TACGAAAATTCTACAAAAACGTTTTGAATTCTTACATTTACTACAAGAGTGGGCTGCTCCAATCCATCGTGGGATTAGCA
GAGGGCTTGAGGAATTGGAAATCGTTTATAAGCCAAGTGTAGATGTATCAGAATCAATGGATTTGTCGAAAATAAAAGAA
GTATACTATGAAAGTTTTCAATCTGTGAAACAACGTGAAATTTTCCGTGGTACGACTTTAATTGGTCCTCATCGTGATGA
TTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGCTCACAAGGCCAGCAACGAACAACTGCACTATCCCTAA
AATTAGCTGAAATTGAATTGATTTATGCAGAGGTAAAAGAGTACCCAATTCTTTTATTAGATGATGTATTATCAGAATTA
GATGATTACCGTCAATCACATCTTTTAAATACAATTCAAGGAAAAGTGCAAACATTTGTGACAACGACGAGTGTCGACGG
AATTGAACACGAAACATTAAAAAAAGCGAAAACAATTCATGTAAAAAGCGGCACGGTAGATTGTGAAATAGACAGAATAT
AA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-346)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7GJS2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

66.576

98.66

0.657