Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   JC772_RS08010 Genome accession   NZ_CP066187
Coordinates   1545960..1546244 (-) Length   94 a.a.
NCBI ID   WP_011983177.1    Uniprot ID   A7GJU9
Organism   Bacillus cytotoxicus strain E28.3     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1540960..1551244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC772_RS07975 (JC772_07975) tmk 1541105..1541731 (+) 627 WP_087094320.1 dTMP kinase -
  JC772_RS07980 (JC772_07980) holB 1541767..1542750 (+) 984 WP_011983171.1 DNA polymerase III subunit delta' -
  JC772_RS07985 (JC772_07985) - 1542756..1543583 (+) 828 WP_011983172.1 stage 0 sporulation family protein -
  JC772_RS07990 (JC772_07990) yabA 1543598..1543948 (+) 351 WP_011983173.1 DNA replication initiation control protein YabA -
  JC772_RS07995 (JC772_07995) - 1544078..1544818 (+) 741 WP_048721201.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  JC772_RS08000 (JC772_08000) - 1544805..1545095 (+) 291 WP_011983175.1 GIY-YIG nuclease family protein -
  JC772_RS08005 (JC772_08005) rsmI 1545064..1545939 (+) 876 WP_048721198.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  JC772_RS08010 (JC772_08010) abrB 1545960..1546244 (-) 285 WP_011983177.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  JC772_RS08015 (JC772_08015) metG 1546630..1548609 (+) 1980 WP_011983178.1 methionine--tRNA ligase -
  JC772_RS08020 (JC772_08020) - 1548769..1549536 (+) 768 WP_087094322.1 TatD family hydrolase -
  JC772_RS08025 (JC772_08025) rnmV 1549691..1550248 (+) 558 WP_011983180.1 ribonuclease M5 -
  JC772_RS08030 (JC772_08030) rsmA 1550245..1551123 (+) 879 WP_011983181.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10563.27 Da        Isoelectric Point: 6.4662

>NTDB_id=518300 JC772_RS08010 WP_011983177.1 1545960..1546244(-) (abrB) [Bacillus cytotoxicus strain E28.3]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDHNLSLADGKIILSKEGAE
QILNELQHYIQSAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=518300 JC772_RS08010 WP_011983177.1 1545960..1546244(-) (abrB) [Bacillus cytotoxicus strain E28.3]
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGCCGCGTGGTAATTCCGATCGAACTACGTCGTACATTAGG
TATTGCAGAAAAGGATGCTCTTGAAATTTACGTGGATGACGAAAAAATCATCCTAAAAAAATACAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCAGATCATAACTTATCTTTAGCTGACGGTAAAATTATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAATTACAACACTACATTCAATCAGCAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)

AbrB C-terminal domain (AbrB_C)

(53-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7GJU9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

86.17

100

0.862