Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   JC773_RS19060 Genome accession   NZ_CP066185
Coordinates   3735581..3735838 (-) Length   85 a.a.
NCBI ID   WP_279671636.1    Uniprot ID   -
Organism   Bacillus cytotoxicus strain PDT2.12     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3730581..3740838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC773_RS19035 (JC773_19035) - 3730595..3731368 (-) 774 WP_012094809.1 sulfite exporter TauE/SafE family protein -
  JC773_RS19040 (JC773_19040) - 3731455..3732243 (-) 789 Protein_3727 sulfotransferase family 2 domain-containing protein -
  JC773_RS19045 (JC773_19045) - 3732712..3733707 (+) 996 WP_012094810.1 tryptophan--tRNA ligase -
  JC773_RS19050 (JC773_19050) - 3734044..3734487 (-) 444 Protein_3729 transposase -
  JC773_RS19055 (JC773_19055) - 3734749..3735201 (-) 453 WP_210351733.1 GNAT family N-acetyltransferase -
  JC773_RS19060 (JC773_19060) abrB 3735581..3735838 (-) 258 WP_279671636.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  JC773_RS19065 (JC773_19065) - 3735828..3736955 (-) 1128 WP_242161920.1 glycerate kinase -
  JC773_RS19070 (JC773_19070) - 3736996..3738468 (-) 1473 WP_210351735.1 family 1 glycosylhydrolase -
  JC773_RS19075 (JC773_19075) - 3738482..3740341 (-) 1860 WP_210351736.1 beta-glucoside-specific PTS transporter subunit IIABC -

Sequence

Protein


Download         Length: 85 a.a.        Molecular weight: 9597.49 Da        Isoelectric Point: 8.9874

>NTDB_id=518267 JC773_RS19060 WP_279671636.1 3735581..3735838(-) (abrB) [Bacillus cytotoxicus strain PDT2.12]
MKIDELGWVVIPIELRRTLGVAEKILWKFLLMVTKSILQKYKSQQACMITGDVSDKNISLVGGKIVLSPEGAETIIQELH
QYLVK

Nucleotide


Download         Length: 258 bp        

>NTDB_id=518267 JC773_RS19060 WP_279671636.1 3735581..3735838(-) (abrB) [Bacillus cytotoxicus strain PDT2.12]
ATAAAAATTGATGAATTAGGTTGGGTAGTAATTCCAATCGAATTAAGACGTACTCTAGGAGTTGCAGAAAAAATCCTATG
GAAATTTTTGTTGATGGTGACAAAATCAATTTTACAGAAATATAAATCACAACAAGCATGTATGATTACAGGAGATGTTT
CAGATAAAAATATATCTTTAGTAGGCGGAAAAATCGTTCTTAGCCCAGAAGGTGCAGAAACGATAATTCAGGAATTGCAC
CAATACCTTGTAAAATAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(46-82)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.537

96.471

0.565