Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   JC773_RS12965 Genome accession   NZ_CP066185
Coordinates   2549619..2550221 (-) Length   200 a.a.
NCBI ID   WP_012093762.1    Uniprot ID   A7GN87
Organism   Bacillus cytotoxicus strain PDT2.12     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2544619..2555221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC773_RS12945 (JC773_12945) dnaD 2545041..2545748 (+) 708 WP_012093758.1 DNA replication protein DnaD -
  JC773_RS12950 (JC773_12950) nth 2545764..2546411 (+) 648 WP_012093759.1 endonuclease III -
  JC773_RS12955 (JC773_12955) - 2546415..2546933 (+) 519 WP_012093760.1 YpoC family protein -
  JC773_RS12960 (JC773_12960) - 2546956..2549553 (-) 2598 WP_048722597.1 PBP1A family penicillin-binding protein -
  JC773_RS12965 (JC773_12965) recU 2549619..2550221 (-) 603 WP_012093762.1 Holliday junction resolvase RecU Machinery gene
  JC773_RS12970 (JC773_12970) - 2550320..2551348 (+) 1029 WP_012093763.1 DUF2515 domain-containing protein -
  JC773_RS12975 (JC773_12975) - 2551813..2552055 (+) 243 WP_012093764.1 hypothetical protein -
  JC773_RS12980 (JC773_12980) - 2552071..2552415 (+) 345 WP_012093765.1 YppE family protein -
  JC773_RS12985 (JC773_12985) - 2552442..2552636 (-) 195 WP_012093766.1 YppF family protein -
  JC773_RS12990 (JC773_12990) - 2552814..2553248 (+) 435 WP_012093767.1 YppG family protein -
  JC773_RS12995 (JC773_12995) - 2553400..2553834 (+) 435 WP_012093768.1 CotD family spore coat protein -
  JC773_RS13000 (JC773_13000) - 2553891..2554445 (+) 555 WP_012093769.1 DUF1273 domain-containing protein -
  JC773_RS13005 (JC773_13005) gpsB 2554543..2554878 (+) 336 WP_012093770.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23411.79 Da        Isoelectric Point: 9.6382

>NTDB_id=518262 JC773_RS12965 WP_012093762.1 2549619..2550221(-) (recU) [Bacillus cytotoxicus strain PDT2.12]
MTIRYPNGKRYNQALQPQKTKMKKHTYGNRGMSLEEELNETNQYYLSHNIACVHKKPTPLQIVKVDYPARSAAVVREAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTNFPLQNFHLHQIEHMKQVIAHDGIAFVIIKFTLYNEIYLLDAKHVISFWNRK
DTGGRKSITKQEIEEHGSLLSCGYHPRIDYISILDMVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=518262 JC773_RS12965 WP_012093762.1 2549619..2550221(-) (recU) [Bacillus cytotoxicus strain PDT2.12]
ATGACCATTCGTTACCCAAACGGAAAAAGATATAATCAAGCTTTACAACCTCAAAAAACAAAAATGAAAAAACATACTTA
TGGTAACAGGGGGATGTCTCTTGAAGAGGAACTAAATGAAACAAATCAATATTATTTGAGTCATAATATTGCCTGTGTAC
ACAAAAAACCAACACCTCTTCAAATTGTAAAAGTGGATTATCCTGCCCGAAGTGCTGCAGTTGTAAGAGAAGCTTATTTT
AAACAGCCTTCTACAACAGATTACAACGGTGTTTATAAGGGTAAATACATTGATTTTGAAGCAAAGGAAACAAAAAATAA
AACAAACTTCCCGCTCCAAAACTTCCATCTCCACCAAATTGAGCATATGAAACAAGTTATTGCTCATGATGGAATTGCAT
TCGTCATTATTAAATTTACACTTTATAACGAAATTTATTTACTCGATGCAAAACACGTTATTTCATTTTGGAATCGCAAA
GATACCGGAGGGAGAAAATCAATTACAAAACAAGAAATTGAGGAACACGGCTCTTTGTTATCATGCGGTTATCATCCTCG
AATCGATTATATTTCTATACTAGACATGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7GN87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

62.5

100

0.625