Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   JC773_RS11095 Genome accession   NZ_CP066185
Coordinates   2185784..2187610 (+) Length   608 a.a.
NCBI ID   WP_210351460.1    Uniprot ID   -
Organism   Bacillus cytotoxicus strain PDT2.12     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 2188179..2189639 2185784..2187610 flank 569


Gene organization within MGE regions


Location: 2185784..2189639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC773_RS11095 (JC773_11095) pepF 2185784..2187610 (+) 1827 WP_210351460.1 oligoendopeptidase F Regulator
  JC773_RS11100 (JC773_11100) - 2188179..2189639 (+) 1461 WP_048723387.1 IS1182-like element ISBcy1 family transposase -

Sequence

Protein


Download         Length: 608 a.a.        Molecular weight: 70637.38 Da        Isoelectric Point: 5.1521

>NTDB_id=518259 JC773_RS11095 WP_210351460.1 2185784..2187610(+) (pepF) [Bacillus cytotoxicus strain PDT2.12]
MSEQNAGKVLPDRSEIEEKNMWRLEDIFQTDEAWEKEFQAIKELLPKLNEFKGKLGDSAESLLAALQYEDEISMRLGKLY
TYAHMRYDQDTTNSTYQALNDRAMNLYSQVSSSTAYIVPEILKISQELLQSFLQENKELRVYEHALEEITRQRPHVLSEA
EESLLAEAAEVMSSSSNTFGMLNNADLKFPSIKDENGEEVEVTHGRYIQFLESDNRRVRHDAFHAVYETYGKFKNTFAST
LSGAVKRNNFNARVRKYDSARQAALSNNHIPETVYDQLIETVHNHLHLLHRYIDIRKRALKLDELHMYDLYTPLVPEVKM
NVKYEEAQEILLKSLHVLGDEYVDILKEAYENRWVDVYENKGKRSGAYSSGAYGTNPYILMNWHDNVNNLFTLAHEFGHS
VHSYYTRKTQPHVYGDYSIFVAEVASTCNEALLNDYLLKTTEDKKERLYLLNHYLEGFRGTVFRQTMFAEFEHIIHQKVQ
EGHAVTPDMLTEIYYDLNKTYFGDAVVIDKEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILEEGKPAVERYINEF
LKAGSSDYPIEVLKKAGVDMTSPEPVKEALQVFEEKLNELEALLFEKK

Nucleotide


Download         Length: 1827 bp        

>NTDB_id=518259 JC773_RS11095 WP_210351460.1 2185784..2187610(+) (pepF) [Bacillus cytotoxicus strain PDT2.12]
ATGTCGGAACAAAATGCAGGAAAAGTATTACCAGATCGCAGTGAAATTGAAGAAAAAAATATGTGGCGTTTAGAAGATAT
CTTTCAAACGGATGAAGCGTGGGAAAAAGAATTTCAAGCCATAAAAGAGCTATTACCGAAGTTAAATGAGTTTAAGGGTA
AGCTTGGTGATTCTGCCGAGTCCTTATTAGCAGCATTACAATATGAAGATGAAATTTCTATGCGGTTAGGAAAATTATAT
ACATATGCACATATGCGTTACGATCAAGATACAACCAATTCTACTTATCAAGCACTCAACGATCGTGCGATGAACTTATA
CTCACAAGTTTCCAGTAGCACAGCATACATCGTGCCTGAAATTTTAAAGATTTCACAAGAACTGTTACAGTCGTTCTTAC
AGGAAAATAAAGAATTACGCGTATATGAACATGCATTAGAAGAGATTACACGTCAGCGTCCTCACGTATTATCTGAGGCT
GAAGAATCATTGCTGGCAGAAGCGGCTGAAGTCATGAGTTCTTCAAGTAATACATTTGGGATGTTGAATAATGCGGATTT
AAAATTTCCATCGATTAAAGATGAGAATGGAGAGGAAGTAGAAGTTACGCATGGTCGCTATATTCAATTTTTAGAGAGTG
ATAATCGTCGCGTGCGCCATGATGCTTTTCATGCTGTGTATGAAACGTACGGGAAATTTAAAAATACATTTGCGAGTACT
TTAAGTGGTGCGGTAAAACGCAATAACTTCAATGCTCGCGTACGCAAATATGATTCTGCACGTCAAGCAGCATTAAGTAA
CAATCATATTCCGGAAACGGTATATGATCAACTTATCGAAACCGTACACAATCATTTACATTTATTACACCGTTACATTG
ATATTCGTAAACGTGCATTAAAACTCGATGAATTACATATGTACGACTTATACACTCCTCTTGTACCAGAAGTGAAAATG
AATGTGAAATATGAAGAAGCACAAGAGATTTTATTAAAATCGTTACATGTTCTTGGTGACGAATATGTTGACATTTTAAA
AGAAGCATATGAAAATCGCTGGGTAGATGTATACGAAAATAAAGGGAAGCGTAGCGGAGCTTATTCATCTGGAGCATATG
GAACAAACCCATATATCTTAATGAACTGGCATGATAATGTAAATAACTTATTTACATTAGCGCATGAATTTGGTCATTCT
GTGCATAGTTACTATACAAGAAAAACACAACCGCACGTGTATGGAGATTATTCCATCTTTGTGGCTGAAGTTGCTTCTAC
ATGTAATGAAGCGCTTCTTAATGACTATCTGTTAAAAACAACAGAAGATAAAAAAGAGCGTTTATATTTATTAAATCATT
ATTTAGAAGGATTCCGCGGAACAGTATTCCGTCAAACGATGTTTGCAGAATTTGAACATATCATCCATCAAAAGGTACAA
GAAGGTCATGCAGTAACACCAGATATGTTAACTGAAATTTACTATGACTTAAATAAAACATACTTTGGAGATGCCGTAGT
AATTGATAAAGAAATTGGGTTAGAATGGTCCCGTATCCCGCATTTCTATTACAATTACTACGTATACCAATATGCAACAG
GATTTAGTGCAGCGACTGCTTTATCGAAACAGATTTTAGAAGAAGGAAAGCCAGCAGTAGAGCGCTATATTAATGAATTC
TTAAAAGCTGGAAGCTCCGATTATCCAATCGAGGTATTGAAAAAAGCAGGGGTAGATATGACATCACCAGAGCCTGTTAA
AGAAGCATTACAAGTATTTGAAGAGAAGTTAAATGAGTTAGAAGCTTTATTATTTGAAAAGAAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-591)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.747

97.533

0.485