Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | JC773_RS06405 | Genome accession | NZ_CP066185 |
| Coordinates | 1240434..1242869 (+) | Length | 811 a.a. |
| NCBI ID | WP_011983220.1 | Uniprot ID | - |
| Organism | Bacillus cytotoxicus strain PDT2.12 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1235434..1247869
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JC773_RS06390 (JC773_06390) | - | 1238178..1238639 (+) | 462 | WP_011983217.1 | CtsR family transcriptional regulator | - |
| JC773_RS06395 (JC773_06395) | - | 1238795..1239343 (+) | 549 | WP_011983218.1 | UvrB/UvrC motif-containing protein | - |
| JC773_RS06400 (JC773_06400) | - | 1239348..1240418 (+) | 1071 | WP_011983219.1 | protein arginine kinase | - |
| JC773_RS06405 (JC773_06405) | clpC | 1240434..1242869 (+) | 2436 | WP_011983220.1 | ATP-dependent protease ATP-binding subunit ClpC | Regulator |
| JC773_RS06410 (JC773_06410) | radA | 1242957..1244333 (+) | 1377 | WP_087097527.1 | DNA repair protein RadA | Machinery gene |
| JC773_RS06415 (JC773_06415) | disA | 1244337..1245410 (+) | 1074 | WP_011983222.1 | DNA integrity scanning diadenylate cyclase DisA | - |
| JC773_RS06420 (JC773_06420) | - | 1245572..1246684 (+) | 1113 | WP_087097529.1 | PIN/TRAM domain-containing protein | - |
| JC773_RS06425 (JC773_06425) | ispD | 1246701..1247381 (+) | 681 | WP_011983224.1 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | - |
Sequence
Protein
Download Length: 811 a.a. Molecular weight: 90888.99 Da Isoelectric Point: 6.3442
>NTDB_id=518246 JC773_RS06405 WP_011983220.1 1240434..1242869(+) (clpC) [Bacillus cytotoxicus strain PDT2.12]
MMFGRFTERAQKVLALSQEEAIRIGHNNIGTEHILLGLVREGEGIAAKALIALGLSPEKIQKEVEALIGRGTEVSQTVHY
TPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNEAASGHQGASSTNAN
TPTLDSLARDLTVIARESRLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIVNNEVPETLRDKRV
MTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDE
YRKYIEKDAALERRFQPIQVDEPSLEESIQILKGLRDRYEAHHRVSITDDAIEVAVKLSDRYITDRFLPDKAIDLIDEAA
SKVRLRSYTTPPNLKELEVKLEEIRKEKDAAVQSQEFEKAASLRDMEQRLREKLEDTKRQWKEQQGKENSEVTVEDIANV
VSTWTRIPVSKLAQTETDKLLNLESILHDRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALA
ESMFGDEDAMIRIDMSEYMEKHSTSRLVGSPPGYVGYEEGGQLTEKVRRKPYSVVLLDEVEKAHPDVFNILLQVLEDGRL
TDSKGRTVDFRNTIVIMTSNVGAEALKRNKHLGFNVQDESRDYADMKGKVMDELKKAFRPEFLNRIDEIIVFHMLEKKHI
QEIVTLMVNQLVKRLEEQEIYLELTDAAIEAIADKGFDREYGARPLRRAIQKHVEDRLSEELLKGVIEKGQKVIFDKERE
SFVIRSAEKVK
MMFGRFTERAQKVLALSQEEAIRIGHNNIGTEHILLGLVREGEGIAAKALIALGLSPEKIQKEVEALIGRGTEVSQTVHY
TPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNEAASGHQGASSTNAN
TPTLDSLARDLTVIARESRLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIVNNEVPETLRDKRV
MTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDE
YRKYIEKDAALERRFQPIQVDEPSLEESIQILKGLRDRYEAHHRVSITDDAIEVAVKLSDRYITDRFLPDKAIDLIDEAA
SKVRLRSYTTPPNLKELEVKLEEIRKEKDAAVQSQEFEKAASLRDMEQRLREKLEDTKRQWKEQQGKENSEVTVEDIANV
VSTWTRIPVSKLAQTETDKLLNLESILHDRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALA
ESMFGDEDAMIRIDMSEYMEKHSTSRLVGSPPGYVGYEEGGQLTEKVRRKPYSVVLLDEVEKAHPDVFNILLQVLEDGRL
TDSKGRTVDFRNTIVIMTSNVGAEALKRNKHLGFNVQDESRDYADMKGKVMDELKKAFRPEFLNRIDEIIVFHMLEKKHI
QEIVTLMVNQLVKRLEEQEIYLELTDAAIEAIADKGFDREYGARPLRRAIQKHVEDRLSEELLKGVIEKGQKVIFDKERE
SFVIRSAEKVK
Nucleotide
Download Length: 2436 bp
>NTDB_id=518246 JC773_RS06405 WP_011983220.1 1240434..1242869(+) (clpC) [Bacillus cytotoxicus strain PDT2.12]
ATGATGTTTGGAAGATTTACAGAACGAGCGCAGAAAGTATTAGCTTTATCTCAAGAGGAAGCAATCCGTATTGGTCATAA
TAATATTGGAACAGAGCATATTTTACTTGGGCTAGTACGTGAAGGTGAAGGTATTGCAGCGAAAGCATTAATTGCTCTTG
GCTTAAGTCCAGAGAAGATACAAAAAGAAGTAGAGGCATTAATTGGTCGTGGTACAGAAGTATCTCAGACTGTTCATTAT
ACTCCTCGTGCGAAAAAGGTCATTGAATTATCCATGGATGAAGCACGTAAATTAGGTCATTCTTATGTTGGAACGGAGCA
TATCTTACTAGGATTAATTCGTGAAGGAGAAGGCGTTGCAGCGCGTGTTTTAAATAACTTAGGTGTAAGTTTAAATAAGG
CGAGACAACAAGTGTTACAACTTCTTGGAAGCAATGAAGCAGCTTCAGGTCATCAAGGTGCTTCATCGACAAATGCCAAT
ACACCAACTTTGGATAGCTTAGCACGTGATTTAACAGTAATTGCACGTGAAAGTAGATTAGATCCTGTTATTGGGCGCAG
TAAGGAAATTCAACGGGTTATTGAGGTGTTAAGCCGTAGAACAAAAAATAACCCGGTGCTAATTGGGGAGCCAGGTGTAG
GTAAGACTGCAATCGCAGAAGGTTTAGCGCAACAAATTGTAAATAACGAAGTTCCGGAAACATTACGAGATAAACGTGTT
ATGACATTAGATATGGGAACAGTTGTAGCTGGTACAAAATATCGTGGTGAGTTTGAGGATCGTTTAAAAAAAGTAATGGA
TGAGATTCGTCAGGCAGGTAACATTATTTTATTTATTGACGAACTTCATACATTAATTGGTGCAGGCGGTGCAGAAGGGG
CAATTGATGCATCGAATATTTTAAAACCTTCGCTAGCGCGTGGCGAACTACAATGTATTGGTGCGACAACTTTAGATGAG
TATCGAAAATATATTGAAAAAGACGCAGCGTTAGAGCGACGCTTCCAACCAATTCAAGTGGATGAACCAAGCTTGGAAGA
ATCTATTCAAATTTTGAAAGGGTTGCGTGATCGATATGAAGCGCATCACCGTGTATCTATTACAGATGATGCAATCGAGG
TAGCGGTAAAGCTTTCAGATCGCTATATTACAGATCGCTTCTTACCGGATAAAGCAATCGATTTAATTGATGAGGCGGCT
TCTAAAGTACGTTTACGTTCTTATACAACGCCACCAAACTTAAAAGAATTAGAAGTGAAACTTGAGGAAATTCGTAAAGA
AAAAGATGCAGCTGTGCAGAGTCAAGAATTCGAAAAAGCTGCTTCATTACGAGATATGGAGCAACGTTTACGTGAAAAAT
TAGAGGATACAAAACGTCAGTGGAAAGAACAGCAAGGAAAAGAAAACTCTGAAGTGACAGTAGAGGATATTGCAAACGTT
GTTTCTACATGGACGCGTATTCCAGTTTCTAAGCTTGCGCAAACAGAAACGGATAAATTGTTAAACTTAGAATCCATTTT
ACATGATCGTGTAATCGGTCAAGATGAAGCTGTTGTAGCTGTAGCGAAGGCGGTACGTCGTGCAAGAGCTGGCTTAAAAG
ATCCAAAACGTCCAATTGGTTCCTTTATTTTCTTAGGACCAACTGGTGTTGGGAAAACAGAATTAGCACGAGCATTAGCG
GAATCTATGTTCGGTGATGAGGATGCTATGATCCGCATCGACATGTCGGAATATATGGAGAAACATTCTACATCTCGTTT
AGTTGGTTCTCCTCCAGGATATGTAGGATATGAAGAGGGCGGTCAATTAACAGAGAAGGTTCGTCGTAAACCGTATTCTG
TTGTTCTATTAGATGAAGTAGAAAAAGCACATCCAGATGTATTTAATATTTTATTACAAGTATTAGAAGACGGCCGTTTG
ACAGACTCTAAAGGTCGCACAGTTGATTTCCGTAATACAATTGTGATTATGACTTCTAACGTTGGTGCTGAGGCATTAAA
ACGCAATAAACACCTTGGATTTAATGTGCAAGATGAGAGCCGTGACTATGCAGATATGAAAGGAAAAGTAATGGACGAAT
TGAAAAAAGCATTCCGTCCAGAATTCTTGAACCGTATCGATGAAATCATTGTGTTCCATATGCTTGAGAAAAAACATATT
CAAGAAATTGTGACACTAATGGTAAATCAACTAGTAAAACGATTAGAAGAACAAGAGATTTATTTAGAGTTAACGGACGC
TGCAATTGAAGCGATTGCTGATAAAGGGTTCGATCGCGAGTATGGTGCTCGTCCACTTCGCAGAGCAATTCAGAAACATG
TGGAAGATCGATTATCAGAAGAACTTCTAAAAGGAGTCATTGAGAAAGGACAAAAAGTTATCTTTGATAAAGAGAGAGAA
TCATTTGTCATTCGCAGTGCAGAAAAGGTAAAATAA
ATGATGTTTGGAAGATTTACAGAACGAGCGCAGAAAGTATTAGCTTTATCTCAAGAGGAAGCAATCCGTATTGGTCATAA
TAATATTGGAACAGAGCATATTTTACTTGGGCTAGTACGTGAAGGTGAAGGTATTGCAGCGAAAGCATTAATTGCTCTTG
GCTTAAGTCCAGAGAAGATACAAAAAGAAGTAGAGGCATTAATTGGTCGTGGTACAGAAGTATCTCAGACTGTTCATTAT
ACTCCTCGTGCGAAAAAGGTCATTGAATTATCCATGGATGAAGCACGTAAATTAGGTCATTCTTATGTTGGAACGGAGCA
TATCTTACTAGGATTAATTCGTGAAGGAGAAGGCGTTGCAGCGCGTGTTTTAAATAACTTAGGTGTAAGTTTAAATAAGG
CGAGACAACAAGTGTTACAACTTCTTGGAAGCAATGAAGCAGCTTCAGGTCATCAAGGTGCTTCATCGACAAATGCCAAT
ACACCAACTTTGGATAGCTTAGCACGTGATTTAACAGTAATTGCACGTGAAAGTAGATTAGATCCTGTTATTGGGCGCAG
TAAGGAAATTCAACGGGTTATTGAGGTGTTAAGCCGTAGAACAAAAAATAACCCGGTGCTAATTGGGGAGCCAGGTGTAG
GTAAGACTGCAATCGCAGAAGGTTTAGCGCAACAAATTGTAAATAACGAAGTTCCGGAAACATTACGAGATAAACGTGTT
ATGACATTAGATATGGGAACAGTTGTAGCTGGTACAAAATATCGTGGTGAGTTTGAGGATCGTTTAAAAAAAGTAATGGA
TGAGATTCGTCAGGCAGGTAACATTATTTTATTTATTGACGAACTTCATACATTAATTGGTGCAGGCGGTGCAGAAGGGG
CAATTGATGCATCGAATATTTTAAAACCTTCGCTAGCGCGTGGCGAACTACAATGTATTGGTGCGACAACTTTAGATGAG
TATCGAAAATATATTGAAAAAGACGCAGCGTTAGAGCGACGCTTCCAACCAATTCAAGTGGATGAACCAAGCTTGGAAGA
ATCTATTCAAATTTTGAAAGGGTTGCGTGATCGATATGAAGCGCATCACCGTGTATCTATTACAGATGATGCAATCGAGG
TAGCGGTAAAGCTTTCAGATCGCTATATTACAGATCGCTTCTTACCGGATAAAGCAATCGATTTAATTGATGAGGCGGCT
TCTAAAGTACGTTTACGTTCTTATACAACGCCACCAAACTTAAAAGAATTAGAAGTGAAACTTGAGGAAATTCGTAAAGA
AAAAGATGCAGCTGTGCAGAGTCAAGAATTCGAAAAAGCTGCTTCATTACGAGATATGGAGCAACGTTTACGTGAAAAAT
TAGAGGATACAAAACGTCAGTGGAAAGAACAGCAAGGAAAAGAAAACTCTGAAGTGACAGTAGAGGATATTGCAAACGTT
GTTTCTACATGGACGCGTATTCCAGTTTCTAAGCTTGCGCAAACAGAAACGGATAAATTGTTAAACTTAGAATCCATTTT
ACATGATCGTGTAATCGGTCAAGATGAAGCTGTTGTAGCTGTAGCGAAGGCGGTACGTCGTGCAAGAGCTGGCTTAAAAG
ATCCAAAACGTCCAATTGGTTCCTTTATTTTCTTAGGACCAACTGGTGTTGGGAAAACAGAATTAGCACGAGCATTAGCG
GAATCTATGTTCGGTGATGAGGATGCTATGATCCGCATCGACATGTCGGAATATATGGAGAAACATTCTACATCTCGTTT
AGTTGGTTCTCCTCCAGGATATGTAGGATATGAAGAGGGCGGTCAATTAACAGAGAAGGTTCGTCGTAAACCGTATTCTG
TTGTTCTATTAGATGAAGTAGAAAAAGCACATCCAGATGTATTTAATATTTTATTACAAGTATTAGAAGACGGCCGTTTG
ACAGACTCTAAAGGTCGCACAGTTGATTTCCGTAATACAATTGTGATTATGACTTCTAACGTTGGTGCTGAGGCATTAAA
ACGCAATAAACACCTTGGATTTAATGTGCAAGATGAGAGCCGTGACTATGCAGATATGAAAGGAAAAGTAATGGACGAAT
TGAAAAAAGCATTCCGTCCAGAATTCTTGAACCGTATCGATGAAATCATTGTGTTCCATATGCTTGAGAAAAAACATATT
CAAGAAATTGTGACACTAATGGTAAATCAACTAGTAAAACGATTAGAAGAACAAGAGATTTATTTAGAGTTAACGGACGC
TGCAATTGAAGCGATTGCTGATAAAGGGTTCGATCGCGAGTATGGTGCTCGTCCACTTCGCAGAGCAATTCAGAAACATG
TGGAAGATCGATTATCAGAAGAACTTCTAAAAGGAGTCATTGAGAAAGGACAAAAAGTTATCTTTGATAAAGAGAGAGAA
TCATTTGTCATTCGCAGTGCAGAAAAGGTAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
86.79 |
99.877 |
0.867 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
50.375 |
98.644 |
0.497 |
| clpC | Streptococcus thermophilus LMD-9 |
46.327 |
100 |
0.482 |
| clpC | Streptococcus thermophilus LMG 18311 |
45.843 |
100 |
0.476 |
| clpC | Streptococcus mutans UA159 |
44.561 |
100 |
0.47 |
| clpC | Streptococcus pneumoniae D39 |
47.382 |
98.89 |
0.469 |
| clpC | Streptococcus pneumoniae Rx1 |
47.382 |
98.89 |
0.469 |
| clpC | Streptococcus pneumoniae TIGR4 |
47.081 |
99.26 |
0.467 |
| clpE | Streptococcus mutans UA159 |
53.846 |
80.148 |
0.432 |
| clpE | Streptococcus pneumoniae R6 |
53.014 |
79.778 |
0.423 |
| clpE | Streptococcus pneumoniae TIGR4 |
53.014 |
79.778 |
0.423 |
| clpE | Streptococcus pneumoniae Rx1 |
53.014 |
79.778 |
0.423 |
| clpE | Streptococcus pneumoniae D39 |
53.014 |
79.778 |
0.423 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
49.271 |
84.587 |
0.417 |