Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   JC773_RS06100 Genome accession   NZ_CP066185
Coordinates   1185529..1185813 (-) Length   94 a.a.
NCBI ID   WP_011983177.1    Uniprot ID   A7GJU9
Organism   Bacillus cytotoxicus strain PDT2.12     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1180529..1190813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC773_RS06065 (JC773_06065) tmk 1180674..1181300 (+) 627 WP_011983170.1 dTMP kinase -
  JC773_RS06070 (JC773_06070) holB 1181336..1182319 (+) 984 WP_011983171.1 DNA polymerase III subunit delta' -
  JC773_RS06075 (JC773_06075) - 1182325..1183152 (+) 828 WP_140388370.1 stage 0 sporulation family protein -
  JC773_RS06080 (JC773_06080) yabA 1183167..1183517 (+) 351 WP_011983173.1 DNA replication initiation control protein YabA -
  JC773_RS06085 (JC773_06085) - 1183647..1184387 (+) 741 WP_087097509.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  JC773_RS06090 (JC773_06090) - 1184374..1184664 (+) 291 WP_087097511.1 GIY-YIG nuclease family protein -
  JC773_RS06095 (JC773_06095) rsmI 1184633..1185508 (+) 876 WP_087097512.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  JC773_RS06100 (JC773_06100) abrB 1185529..1185813 (-) 285 WP_011983177.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  JC773_RS06105 (JC773_06105) metG 1186199..1188178 (+) 1980 WP_011983178.1 methionine--tRNA ligase -
  JC773_RS06110 (JC773_06110) - 1188338..1189105 (+) 768 WP_087097516.1 TatD family hydrolase -
  JC773_RS06115 (JC773_06115) rnmV 1189260..1189817 (+) 558 WP_011983180.1 ribonuclease M5 -
  JC773_RS06120 (JC773_06120) rsmA 1189814..1190692 (+) 879 WP_087097518.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10563.27 Da        Isoelectric Point: 6.4662

>NTDB_id=518245 JC773_RS06100 WP_011983177.1 1185529..1185813(-) (abrB) [Bacillus cytotoxicus strain PDT2.12]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDHNLSLADGKIILSKEGAE
QILNELQHYIQSAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=518245 JC773_RS06100 WP_011983177.1 1185529..1185813(-) (abrB) [Bacillus cytotoxicus strain PDT2.12]
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGCCGCGTGGTAATTCCGATCGAACTACGTCGTACATTAGG
TATTGCAGAAAAGGATGCTCTTGAAATTTACGTGGATGACGAAAAAATCATCCTAAAAAAATACAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCAGATCATAACTTATCTTTAGCTGACGGTAAAATTATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAATTACAACACTACATTCAATCAGCAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)

AbrB C-terminal domain (AbrB_C)

(53-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7GJU9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

86.17

100

0.862