Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   JC773_RS05895 Genome accession   NZ_CP066185
Coordinates   1146328..1147449 (+) Length   373 a.a.
NCBI ID   WP_011983151.1    Uniprot ID   A7GJS2
Organism   Bacillus cytotoxicus strain PDT2.12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1141328..1152449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC773_RS05865 (JC773_05865) spoIIIJ 1141366..1142133 (-) 768 WP_012096471.1 YidC family membrane integrase SpoIIIJ -
  JC773_RS05870 (JC773_05870) rnpA 1142192..1142539 (-) 348 WP_012096472.1 ribonuclease P protein component -
  JC773_RS05875 (JC773_05875) rpmH 1142616..1142750 (-) 135 WP_000831901.1 50S ribosomal protein L34 -
  JC773_RS05880 (JC773_05880) dnaA 1143315..1144655 (+) 1341 WP_048723589.1 chromosomal replication initiator protein DnaA -
  JC773_RS05885 (JC773_05885) dnaN 1144833..1145978 (+) 1146 WP_048723591.1 DNA polymerase III subunit beta -
  JC773_RS05890 (JC773_05890) yaaA 1146103..1146315 (+) 213 WP_011983150.1 S4 domain-containing protein YaaA -
  JC773_RS05895 (JC773_05895) recF 1146328..1147449 (+) 1122 WP_011983151.1 DNA replication/repair protein RecF Machinery gene
  JC773_RS05900 (JC773_05900) gyrB 1147488..1149410 (+) 1923 WP_011983152.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  JC773_RS05905 (JC773_05905) gyrA 1149501..1151966 (+) 2466 WP_011983153.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 373 a.a.        Molecular weight: 43134.46 Da        Isoelectric Point: 6.7810

>NTDB_id=518243 JC773_RS05895 WP_011983151.1 1146328..1147449(+) (recF) [Bacillus cytotoxicus strain PDT2.12]
MFISEIQLKNYRNYEDLNLSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEDYGKIKGRLQKRNSS
VSLELNISKKGKKAKLNELEQQKLSQYIGEMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQR
NHLLKAMQGKNEETMLDVFTLQLIEHGTKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKIKE
VYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYAEVKEYPILLLDDVLSEL
DDYRQSHLLNTIQGKVQTFVTTTSVDGIEHETLKKAKTIHVKSGTVDCEIDRI

Nucleotide


Download         Length: 1122 bp        

>NTDB_id=518243 JC773_RS05895 WP_011983151.1 1146328..1147449(+) (recF) [Bacillus cytotoxicus strain PDT2.12]
TTGTTTATTTCAGAAATACAATTAAAAAATTATCGAAATTATGAAGATTTAAACCTTTCTTTTGAGGATAAAGTCAATGT
AATCATTGGTGAAAATGCACAAGGGAAAACAAATTTGATGGAAGCGATCTATGTGTTAGCAATGGCGAAATCTCATAGAA
CTTCAAATGATCGTGAACTCATCCGATGGGATGAGGATTATGGTAAAATAAAAGGTAGATTACAAAAACGAAATAGTTCC
GTATCTTTGGAATTAAATATTTCTAAAAAAGGAAAAAAGGCAAAATTGAATGAACTTGAACAACAAAAGTTGAGCCAATA
TATTGGTGAGATGAACGTTGTTATGTTTGCCCCTGAAGATTTAAATCTTGTAAAAGGAAGTCCTCAAGTCAGAAGACGCT
TTTTAGATATGGAATTAGGACAAATAGCTCCTGTTTATTTGTATGAATTAAGTCAATATCAAAAAGTGCTCACACAACGA
AACCATTTGCTTAAGGCAATGCAAGGTAAAAATGAGGAAACGATGTTGGATGTATTTACGCTTCAACTTATTGAACATGG
TACGAAAATTCTACAAAAACGTTTTGAATTCTTACATTTACTACAAGAGTGGGCTGCTCCAATCCATCGTGGGATTAGCA
GAGGACTTGAGGAATTGGAAATCGTTTATAAGCCAAGTGTAGATGTATCAGAATCAATGGATTTGTCGAAAATAAAAGAA
GTATACTATGAAAGTTTTCAATCTGTGAAACAACGTGAAATTTTCCGTGGTACGACTTTAATTGGTCCTCATCGTGATGA
TTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGCTCACAAGGCCAGCAACGAACAACTGCACTATCCCTAA
AATTAGCTGAAATTGAATTGATTTATGCAGAGGTAAAAGAGTACCCAATTCTTTTATTAGATGATGTATTATCAGAATTA
GATGATTACCGTCAATCACATCTTTTAAATACAATTCAAGGAAAAGTGCAAACATTTGTGACAACGACGAGTGTCGACGG
AATTGAACACGAAACATTAAAAAAAGCGAAAACAATTCATGTAAAAAGCGGCACGGTAGATTGTGAAATAGACAGAATAT
AA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-346)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

66.576

98.66

0.657