Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   JC773_RS00470 Genome accession   NZ_CP066185
Coordinates   78902..79648 (-) Length   248 a.a.
NCBI ID   WP_012095488.1    Uniprot ID   A7GSZ3
Organism   Bacillus cytotoxicus strain PDT2.12     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 73902..84648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC773_RS00450 (JC773_00450) dnaG 74723..76519 (-) 1797 WP_012095484.1 DNA primase -
  JC773_RS00455 (JC773_00455) - 76558..77016 (-) 459 WP_012095485.1 YaiI/YqxD family protein -
  JC773_RS00460 (JC773_00460) - 77321..78133 (-) 813 WP_012095486.1 pyruvate, water dikinase regulatory protein -
  JC773_RS00465 (JC773_00465) - 78163..78795 (-) 633 WP_087095438.1 helix-turn-helix transcriptional regulator -
  JC773_RS00470 (JC773_00470) recO 78902..79648 (-) 747 WP_012095488.1 DNA repair protein RecO Machinery gene
  JC773_RS00475 (JC773_00475) - 79682..79825 (-) 144 WP_012095489.1 YqzL family protein -
  JC773_RS00480 (JC773_00480) era 79936..80841 (-) 906 WP_012095490.1 GTPase Era -
  JC773_RS00485 (JC773_00485) - 80834..81193 (-) 360 Protein_98 cytidine deaminase -
  JC773_RS00490 (JC773_00490) - 81248..81601 (-) 354 WP_012095491.1 diacylglycerol kinase family protein -
  JC773_RS00495 (JC773_00495) ybeY 81598..82068 (-) 471 WP_012095492.1 rRNA maturation RNase YbeY -
  JC773_RS00500 (JC773_00500) - 82065..84209 (-) 2145 WP_012095493.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28692.20 Da        Isoelectric Point: 7.4196

>NTDB_id=518226 JC773_RS00470 WP_012095488.1 78902..79648(-) (recO) [Bacillus cytotoxicus strain PDT2.12]
MFQKVEGIVIRTTDYGETNKIVTIFSREFGKISVMARGAKKPKSRLASISQLMTHGHFLIQMGSGLGTLQQGEMISSMKE
IREDIFLTAYASFIVELTDKATEDKKNNPYLFEMLYQTLHYMCDGVDPEVLSLIYQTKMLPVLGMHPYFDTCAICHQETD
FVAFSVREGGFLCFRHAEQDPYRIPVGEAVHKLLRLFYHFDLGRLGNVSVKDETKRQIRTVLNTYYDEYCGIYLKSRRFL
EQLDKFQI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=518226 JC773_RS00470 WP_012095488.1 78902..79648(-) (recO) [Bacillus cytotoxicus strain PDT2.12]
ATGTTTCAAAAAGTTGAGGGCATTGTTATCCGAACAACAGATTACGGAGAAACGAACAAGATTGTTACTATATTTTCTCG
TGAATTTGGAAAAATAAGTGTAATGGCAAGAGGAGCGAAAAAACCAAAAAGTAGGTTAGCATCTATTTCGCAACTCATGA
CGCATGGTCATTTCCTAATTCAAATGGGATCTGGTCTCGGAACTTTGCAACAAGGTGAAATGATTTCATCGATGAAAGAA
ATTCGAGAAGATATTTTTTTAACTGCTTATGCATCGTTTATCGTGGAATTGACAGATAAAGCCACGGAAGATAAAAAGAA
CAATCCGTATTTATTTGAAATGTTATATCAGACACTTCACTATATGTGTGATGGTGTTGATCCTGAAGTATTATCTCTTA
TTTATCAAACGAAAATGCTTCCGGTATTAGGGATGCATCCATACTTTGATACATGTGCGATTTGTCACCAAGAAACAGAC
TTTGTCGCCTTCTCTGTAAGAGAAGGCGGTTTTCTGTGCTTTCGTCACGCAGAACAAGATCCGTATCGCATTCCAGTTGG
TGAGGCGGTTCATAAGTTATTACGTCTCTTTTATCACTTTGACTTAGGTCGGCTTGGTAATGTATCAGTAAAAGATGAAA
CGAAGCGACAAATTCGTACCGTATTGAATACATATTATGATGAATATTGTGGCATATATTTGAAATCAAGACGTTTTCTT
GAACAACTTGATAAATTTCAAATATAA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-238)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7GSZ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

57.085

99.597

0.569