Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   JC777_RS11240 Genome accession   NZ_CP066184
Coordinates   2040631..2041425 (+) Length   264 a.a.
NCBI ID   WP_012095325.1    Uniprot ID   -
Organism   Bacillus cytotoxicus strain SM1.1     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2038976..2054224 2040631..2041425 within 0
IScluster/Tn 2038976..2051580 2040631..2041425 within 0


Gene organization within MGE regions


Location: 2038976..2054224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC777_RS11235 (JC777_11240) - 2038976..2040309 (+) 1334 WP_210351372.1 IS3 family transposase -
  JC777_RS11240 (JC777_11245) spo0A 2040631..2041425 (+) 795 WP_012095325.1 sporulation transcription factor Spo0A Regulator
  JC777_RS22570 - 2041558..2041743 (+) 186 WP_242136722.1 hypothetical protein -
  JC777_RS11250 (JC777_11255) - 2042040..2042588 (+) 549 WP_242136721.1 hypothetical protein -
  JC777_RS11255 (JC777_11260) - 2042652..2043793 (+) 1142 WP_210351765.1 IS3-like element ISBce13 family transposase -
  JC777_RS11260 (JC777_11265) - 2043932..2044627 (+) 696 WP_242136512.1 ABC transporter ATP-binding protein -
  JC777_RS11265 (JC777_11270) - 2044649..2045410 (+) 762 WP_087099101.1 ABC transporter ATP-binding protein -
  JC777_RS11270 (JC777_11275) - 2045407..2047896 (+) 2490 WP_087099099.1 FtsX-like permease family protein -
  JC777_RS11275 (JC777_11280) tnpA 2048196..2048638 (+) 443 Protein_1960 IS200/IS605 family transposase -
  JC777_RS11280 (JC777_11285) - 2049067..2049213 (-) 147 WP_012095324.1 YycC family protein -
  JC777_RS11285 (JC777_11290) - 2049263..2049991 (+) 729 WP_012095323.1 glycerophosphodiester phosphodiesterase -
  JC777_RS11290 (JC777_11295) - 2050120..2051580 (+) 1461 WP_048723387.1 IS1182-like element ISBcy1 family transposase -
  JC777_RS11295 (JC777_11300) - 2051781..2052014 (-) 234 WP_012095322.1 DUF2627 domain-containing protein -
  JC777_RS11300 (JC777_11305) - 2052152..2054224 (+) 2073 WP_012095321.1 sigma-54-dependent Fis family transcriptional regulator -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29453.21 Da        Isoelectric Point: 7.4717

>NTDB_id=518204 JC777_RS11240 WP_012095325.1 2040631..2041425(+) (spo0A) [Bacillus cytotoxicus strain SM1.1]
MEKIKVCLVDDNKELVSMLESYVAAQDDMEVIGTAYNGQECLNLLKEKQPDVLVLDIIMPHLDGLAVLEKMRHIERLKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQVSGKTNAAIKRPLPSFRSVTTADGKPKNLDASITSIIHE
IGVPAHIKGYMYLREAISMVYNDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSMS
KAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 795 bp        

>NTDB_id=518204 JC777_RS11240 WP_012095325.1 2040631..2041425(+) (spo0A) [Bacillus cytotoxicus strain SM1.1]
GTGGAGAAAATCAAAGTATGTCTTGTGGATGATAATAAAGAATTGGTATCAATGCTAGAAAGTTATGTTGCTGCCCAAGA
TGATATGGAAGTAATCGGAACGGCTTATAATGGTCAAGAATGTTTAAATTTATTAAAAGAAAAACAACCTGATGTACTCG
TTTTAGACATTATTATGCCACATTTAGATGGCCTAGCAGTACTGGAGAAAATGCGACATATTGAACGACTAAAACAACCG
AATGTTATTATGTTAACAGCATTTGGGCAAGAAGATGTGACAAAGAAAGCAGTTGATCTAGGAGCTTCTTATTTCATATT
AAAACCATTTGATATGGAGAATTTAACGAGTCATATTCGTCAAGTAAGTGGTAAAACAAATGCTGCGATAAAACGCCCAC
TACCATCTTTCCGATCGGTAACAACAGCAGATGGAAAACCGAAAAATTTAGATGCGAGTATTACGAGCATTATTCACGAA
ATTGGTGTCCCAGCTCATATTAAAGGATATATGTATTTACGCGAAGCAATTTCTATGGTGTACAACGACATTGAGTTGTT
AGGATCTATTACGAAAGTATTATATCCAGATATCGCTAAGAAATATAATACAACTGCAAGTCGTGTGGAACGTGCAATTC
GACATGCGATTGAAGTAGCATGGAGCCGTGGGAATATTGATTCTATCTCATCTTTATTCGGTTATACCGTATCCATGTCA
AAAGCAAAACCGACGAATTCCGAATTTATTGCAATGGTTGCGGATAAATTGAGACTTGAACATAAGGCGAGTTGA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(154-257)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

81.648

100

0.826